View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6567_low_15 (Length: 440)
Name: NF6567_low_15
Description: NF6567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6567_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 10 - 424
Target Start/End: Original strand, 2591274 - 2591688
Alignment:
| Q |
10 |
attatactaattttgtaattaacatgatctactcaaccaattatagattggtttaagtggtaacagagttgatctccttaagcatgtggtcaagagtttg |
109 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2591274 |
attacactaattttgtaattaacatgatctactcaaccaattatagattggttcaagtggtaatagagttgatctccttaagcatgtggtcaagagtttg |
2591373 |
T |
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| Q |
110 |
aatcttgttcatgcgtattnnnnnnnnnttgttgaaagaggagaacccaatttttgtgtaccacatgtttcgtaataaagattattcaattctaaaggcg |
209 |
Q |
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|||||||||||||||||| | |||| |||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||| | |
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| T |
2591374 |
aatcttgttcatgcgtataaaaaaaatct-gttggaagaggagaacccaatttttatgtaccacttatttcgtaataaagattattcaattctaaaggtg |
2591472 |
T |
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| Q |
210 |
gaggagacttcatacaaatgttatggcnnnnnnnntgatctgctccataaaa-ttgacctgctctaattaccgcagctcaaataaacccaattttttaat |
308 |
Q |
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||||||||||||||||||||||||||| | |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2591473 |
gaggagacttcatacaaatgttatggcaaaaaaaataatctgctccaaaaaaattgacctgctctaattaccgcagctcaaataaacccaattttttaat |
2591572 |
T |
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| Q |
309 |
caaataataatacatgcattgaacaaatttaagcataacaagtacaatcatcaaatgaaaagttggccaaatttattcattaaaattaaaagaacacagt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2591573 |
caaataataatacatgcattgaacaaatttaagcataacaagtacaatcatcaaatgaaaagttggccaaatttattcattaaaattaaaagaacacagt |
2591672 |
T |
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| Q |
409 |
tgctagatgaggcaaa |
424 |
Q |
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| T |
2591673 |
tgctagatgaggcaaa |
2591688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 322 - 424
Target Start/End: Original strand, 2577838 - 2577939
Alignment:
| Q |
322 |
atgcattgaacaaatttaagcataacaagtacaatcatcaaatgaaaagttggccaaatttattcattaaaattaaaagaacacagttgctagatgaggc |
421 |
Q |
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|||||||| ||||||||||| ||||||||| |||| ||||||||||| ||| |||||||||||| ||||||||||||| |||| | |||||||||||||| |
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| T |
2577838 |
atgcattgcacaaatttaagtataacaagtccaataatcaaatgaaa-gttcgccaaatttatttattaaaattaaaacaacaaaattgctagatgaggc |
2577936 |
T |
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| Q |
422 |
aaa |
424 |
Q |
| |
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||| |
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| T |
2577937 |
aaa |
2577939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 346 - 424
Target Start/End: Original strand, 2599352 - 2599429
Alignment:
| Q |
346 |
acaagtacaatcatcaaatgaaaagttggccaaatttattcattaaaattaaaagaacacagttgctagatgaggcaaa |
424 |
Q |
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|||||||||||||||||| |||| ||| |||||||||||| |||||||||||||||||| |||| || ||||||||||| |
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| T |
2599352 |
acaagtacaatcatcaaacgaaa-gtttgccaaatttatttattaaaattaaaagaacaaagttactcgatgaggcaaa |
2599429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 314 - 424
Target Start/End: Original strand, 2607849 - 2607954
Alignment:
| Q |
314 |
aataatacatgcattgaacaaatttaagcataacaagtacaatcatcaaatgaaaagttggccaaatttattcattaaaattaaaagaacacagttgcta |
413 |
Q |
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|||||| ||||||||| ||||||||||| || ||||| |||||||||| ||| |||||| ||||||||| ||||| |||||||||||| |||||||| |
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| T |
2607849 |
aataatccatgcattgcacaaatttaagtatgacaagcacaatcatcacatg-aaagttcgccaaattt----attaagattaaaagaacaaagttgcta |
2607943 |
T |
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| Q |
414 |
gatgaggcaaa |
424 |
Q |
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|||||||||| |
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| T |
2607944 |
aatgaggcaaa |
2607954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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