View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6567_low_17 (Length: 428)
Name: NF6567_low_17
Description: NF6567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6567_low_17 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 21 - 422
Target Start/End: Complemental strand, 176113 - 175714
Alignment:
| Q |
21 |
ccacttacaaatttgccaacattcccttcgggtatacccatgagttgcgaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagcct |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
176113 |
ccacttacaaatttgccaacattcccttcgggtatacccatgagttgcgaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgaacct |
176014 |
T |
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| Q |
121 |
taacttgagttttgtaaatttcattttgaaatattccacgagatatatagctagaaacagcaactaccttgtaagtatgggtaaattgagcgtcataccc |
220 |
Q |
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| T |
176013 |
taacttgagttttgtaaacatcattttgaa---ttccacgagatatatagctagaaacagcaactaccttgtaagtatgggtaaattgagcgtcataccc |
175917 |
T |
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| Q |
221 |
aatggtgtatgcaatttgtagacttttctcgaaatccaaagagggcaatatattgaatttggtggtacaagggttccatagtagcggatcaccacagtcg |
320 |
Q |
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| T |
175916 |
aatggtgtatgcaatttgtagacttttctcgaaatccaaagagggcaatatattgaatttggtggtacaagggttccatagtagcggatcaccacagtcg |
175817 |
T |
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| Q |
321 |
aatctgtcatcgatgg-ttgaagacagatgatgccatcgcaagagtcagctatgatagcacgaatgttagaaggatttagaggaaagttgagcttcatct |
419 |
Q |
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| T |
175816 |
aatctgtcatcgatggtttgaagacagatgatgccatcgcaagagtcagctatgatagcacgaatgttagaaggatttagaggaaagttgagcttcatat |
175717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 134
Target Start/End: Original strand, 7564993 - 7565106
Alignment:
| Q |
21 |
ccacttacaaatttgccaacattcccttcgggtatacccatgagttgcgaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagcct |
120 |
Q |
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| T |
7564993 |
ccacttacaaatttcccaacacgtccttcaggtacacccttgttttcagaagggaagtctggaatccttctccaaacattgctacctaaagtatgaacct |
7565092 |
T |
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| Q |
121 |
taacttgagttttg |
134 |
Q |
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| T |
7565093 |
taacttgagttttg |
7565106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 44 - 134
Target Start/End: Original strand, 1471188 - 1471278
Alignment:
| Q |
44 |
cccttcgggtatacccatgagttgcgaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttg |
134 |
Q |
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| T |
1471188 |
cccttcgggttgacccatgagctgagaagggaagtcttgaatcgttctccaaaaattgttacctaaagtatgaaccttaactagagttttg |
1471278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 69 - 134
Target Start/End: Original strand, 40659 - 40724
Alignment:
| Q |
69 |
gaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttg |
134 |
Q |
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| T |
40659 |
gaagggaagtcttcaatccttctccaagagttggtgcccaaagtatgaactttaacttgagttttg |
40724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 69 - 134
Target Start/End: Complemental strand, 55419543 - 55419478
Alignment:
| Q |
69 |
gaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttg |
134 |
Q |
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| T |
55419543 |
gaagggaagtctggtatccttttccaaaagttggtacctaaagtatgagccctaacttgagttttg |
55419478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 3926868 - 3926760
Alignment:
| Q |
21 |
ccacttacaaatttgccaacattcccttcgggtatacccatgagttgcgaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagcct |
120 |
Q |
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|||||||||||||| ||||||| ||| | ||||| |||||||| | |||||||||| ||||||||| |||||| | ||||| |||| ||| ||| || |
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| T |
3926868 |
ccacttacaaatttcccaacatacccattgggtaaacccatgatatttgaagggaagtttggaatcctcctccaaaaattggtacctagagtatgaaccc |
3926769 |
T |
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| Q |
121 |
taacttgag |
129 |
Q |
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| T |
3926768 |
taacttgag |
3926760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 1421453 - 1421520
Alignment:
| Q |
69 |
gaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttgtaa |
137 |
Q |
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| T |
1421453 |
gaagggaagtccttaatccttctccaagagttggtgcc-aaagtatgaacttcaacttgagttttgtaa |
1421520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 134
Target Start/End: Original strand, 24233688 - 24233753
Alignment:
| Q |
69 |
gaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttg |
134 |
Q |
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| T |
24233688 |
gaagggaagtccttaatccttctccaagagtcggtacctaatgtatgaactttaacttgagttttg |
24233753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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