View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6567_low_19 (Length: 410)
Name: NF6567_low_19
Description: NF6567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6567_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 66 - 372
Target Start/End: Original strand, 33049975 - 33050290
Alignment:
| Q |
66 |
tgtggtcttagaagaatccaaagatttggatgtgatgaagattgaagaacttcaagcaagccttgaagcact----------------gataggaacaaa |
149 |
Q |
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| T |
33049975 |
tgtggtcttagaagaatccaaagatttggatgtgatgaagattgaagaacttcaagcaagccttgaagcacatgaattgaggttaaccgataggaacaaa |
33050074 |
T |
|
| Q |
150 |
gaaaaatccaaaggttttgcattagatcaagctttgcaagctcaatatacaaataaaaggaaatacaagaaaggaaagaattattggaatgataatgctt |
249 |
Q |
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| T |
33050075 |
gaaaaatccaaaggttctgcattagatcaagctttgcaagctcaatatacaaataaaaggaaatgcaagaaaggaaagaattattggaatgataaagctt |
33050174 |
T |
|
| Q |
250 |
ccaagaatgatgaaggttcaagtaaaaataaagaaagcttcgagaaagaatgagattcaatgatataatcttaaaaaatgggggcattatgtatctgaat |
349 |
Q |
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| T |
33050175 |
ccaagaatgattaaggtt-------aaataaagaaagcttcgagaaagaaggagattcaatgatataatcttaaaaaatgggggcattatgtatctgaat |
33050267 |
T |
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| Q |
350 |
gcaagtccaagaaagttccaagg |
372 |
Q |
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| T |
33050268 |
tcaagtccaagaaagttccaagg |
33050290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 40 - 134
Target Start/End: Complemental strand, 28452219 - 28452125
Alignment:
| Q |
40 |
ttgacaccaagatttgatcatattgttgtggtcttagaagaatccaaagatttggatgtgatgaagattgaagaacttcaagcaagccttgaagc |
134 |
Q |
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| T |
28452219 |
ttgacaccaaggtttgatcatattgttgtagtcttagaagaatccaaagatttggatgtgatcaagattgaagaattgcaggcaagtcttgaagc |
28452125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 370
Target Start/End: Complemental strand, 28451933 - 28451893
Alignment:
| Q |
330 |
ggggcattatgtatctgaatgcaagtccaagaaagttccaa |
370 |
Q |
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| T |
28451933 |
ggggcattatgcatctgaatgcaagtctaagaaagttccaa |
28451893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 16847183 - 16847069
Alignment:
| Q |
22 |
gaaaaggttctcagaattttgacaccaagatttgatcatattgttgtggtcttagaagaatccaaagatttggatgtgatgaagattgaagaacttcaag |
121 |
Q |
| |
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|||||||||||||||| || ||| ||| ||||||||| ||||| |||| | |||| ||||| |||||||| ||| |||||||| || || || |||| |
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| T |
16847183 |
gaaaaggttctcagaaccttaacatcaaaatttgatcacattgtagtggccctagaggaatctaaagatttagattctatgaagatagaggagctgcaag |
16847084 |
T |
|
| Q |
122 |
caagccttgaagcac |
136 |
Q |
| |
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|||| |||||||||| |
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| T |
16847083 |
caagtcttgaagcac |
16847069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 21793805 - 21793691
Alignment:
| Q |
22 |
gaaaaggttctcagaattttgacaccaagatttgatcatattgttgtggtcttagaagaatccaaagatttggatgtgatgaagattgaagaacttcaag |
121 |
Q |
| |
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|||||||||||||||| || ||| ||||||||||||| ||||| |||| | |||| ||||| ||||| || ||| |||||||| || ||||| || | |
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| T |
21793805 |
gaaaaggttctcagaaccttaacatcaagatttgatcacattgtagtggccctagaggaatctaaagacttagattctatgaagatagaggaactgcagg |
21793706 |
T |
|
| Q |
122 |
caagccttgaagcac |
136 |
Q |
| |
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|||| |||||||||| |
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| T |
21793705 |
caagtcttgaagcac |
21793691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 45504110 - 45503996
Alignment:
| Q |
22 |
gaaaaggttctcagaattttgacaccaagatttgatcatattgttgtggtcttagaagaatccaaagatttggatgtgatgaagattgaagaacttcaag |
121 |
Q |
| |
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|||||||||||||||| || ||| ||||||||||||| ||||| |||| | |||| ||||| ||||| || ||| |||||||| || ||||| || | |
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| T |
45504110 |
gaaaaggttctcagaaccttaacatcaagatttgatcacattgtagtggccctagaggaatctaaagacttagattctatgaagatagaggaactgcagg |
45504011 |
T |
|
| Q |
122 |
caagccttgaagcac |
136 |
Q |
| |
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|||| |||||||||| |
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| T |
45504010 |
caagtcttgaagcac |
45503996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 45496368 - 45496254
Alignment:
| Q |
22 |
gaaaaggttctcagaattttgacaccaagatttgatcatattgttgtggtcttagaagaatccaaagatttggatgtgatgaagattgaagaacttcaag |
121 |
Q |
| |
|
|||||||||||||||| || ||| ||||||||||||| ||||| |||| | |||| ||||| ||||| || ||| |||||||| || || || || | |
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| T |
45496368 |
gaaaaggttctcagaaccttaacatcaagatttgatcacattgtagtggccctagaggaatctaaagacttagattctatgaagatagaggagctgcagg |
45496269 |
T |
|
| Q |
122 |
caagccttgaagcac |
136 |
Q |
| |
|
|||| |||||||||| |
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|
| T |
45496268 |
caagtcttgaagcac |
45496254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 7500684 - 7500570
Alignment:
| Q |
22 |
gaaaaggttctcagaattttgacaccaagatttgatcatattgttgtggtcttagaagaatccaaagatttggatgtgatgaagattgaagaacttcaag |
121 |
Q |
| |
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|||||||||||||||| || ||| ||||||||||||| ||||| |||| | ||| ||||| ||||| || ||| | |||||| || ||||| |||| |
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| T |
7500684 |
gaaaaggttctcagaaccttaacatcaagatttgatcacattgtagtggccctaggggaatctaaagacttagattctacgaagatagaggaactgcaag |
7500585 |
T |
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| Q |
122 |
caagccttgaagcac |
136 |
Q |
| |
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|||| |||||||||| |
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| T |
7500584 |
caagtcttgaagcac |
7500570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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