View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6567_low_22 (Length: 365)

Name: NF6567_low_22
Description: NF6567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6567_low_22
NF6567_low_22
[»] chr7 (6 HSPs)
chr7 (2-360)||(8354052-8354410)
chr7 (252-300)||(8360468-8360516)
chr7 (80-138)||(33362378-33362436)
chr7 (83-135)||(42012687-42012739)
chr7 (48-140)||(23944095-23944187)
chr7 (80-140)||(32962355-32962415)
[»] chr5 (3 HSPs)
chr5 (62-140)||(41264562-41264640)
chr5 (2-43)||(41264430-41264471)
chr5 (80-140)||(14138596-14138656)
[»] chr1 (2 HSPs)
chr1 (62-140)||(68130-68208)
chr1 (74-138)||(52432706-52432770)
[»] chr6 (3 HSPs)
chr6 (1-43)||(7556093-7556135)
chr6 (81-189)||(7555202-7555311)
chr6 (80-157)||(32342651-32342728)
[»] chr8 (3 HSPs)
chr8 (80-140)||(33897620-33897680)
chr8 (45-135)||(35574609-35574699)
chr8 (2-34)||(29969154-29969186)
[»] chr3 (1 HSPs)
chr3 (87-182)||(54437864-54437959)


Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 2 - 360
Target Start/End: Complemental strand, 8354410 - 8354052
Alignment:
Q  2 ttcattcaacatgtgatattcatatctttcgttatcataatcattaccattttaaacttgagaacatctattttcttgatctctttcatttaacatgtga 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8354410 ttcattcaacatgtgatattcatatctttcgttatcataatcattaccattttaaactagagaacatctattttcttgatctctttcatttaacatgtga 8354311  T
Q  102 tttccatattttttgttctaaaatcgaatcatatttatctgtaaggataaattacctcttatttaagaaggggtaacgtagtcctcaccaattgataaat 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8354310 tttccatattttttgttctaaaatcgaatcatatttatctgtaaggataaattacctcttattcaagaaggggtaacgtagtcctcaccaattgataaat 8354211  T
Q  202 ataagttgaaacttgataaaacattatttgaataccaagtactatggtagatttgaaatttgtggaaatacttgcgttttaaatttaccatagatttttg 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8354210 ataagttgaaacttgataaaacattatttgaataccaagtactatggtagatttgaaatttgtggaaatacttgcgttttaaatttaccatagatttttg 8354111  T
Q  302 gtaacgcctttgataaaaagaaaaattactttctaaaacgactgaatgttcatatcact 360  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  8354110 gtaacgcctttgataaaaagaaaaattactttctgaaacgactgaatgttgatatcact 8354052  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 252 - 300
Target Start/End: Complemental strand, 8360516 - 8360468
Alignment:
Q  252 atttgaaatttgtggaaatacttgcgttttaaatttaccatagattttt 300  Q
    ||||||||||||||||||||| |  ||||||||||||||||||||||||    
T  8360516 atttgaaatttgtggaaatacctatgttttaaatttaccatagattttt 8360468  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 138
Target Start/End: Complemental strand, 33362436 - 33362378
Alignment:
Q  80 atctctttcatttaacatgtgatttccatattttttgttctaaaatcgaatcatattta 138  Q
    ||||| |||||| |||||||||||| ||  | |||||||||||||||||||||||||||    
T  33362436 atctccttcattcaacatgtgatttacaactcttttgttctaaaatcgaatcatattta 33362378  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 42012687 - 42012739
Alignment:
Q  83 tctttcatttaacatgtgatttccatattttttgttctaaaatcgaatcatat 135  Q
    |||||||||||| ||||||||| ||| ||||| |||| |||||||||||||||    
T  42012687 tctttcatttaagatgtgatttacatctttttcgttccaaaatcgaatcatat 42012739  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 23944095 - 23944187
Alignment:
Q  48 ccattttaaacttgagaacatctattttcttgatctctttcatttaacatgtgatttccatattttttgttctaaaatcgaatcatatttatc 140  Q
    ||||||| | ||| |||||||| |  |||||  ||||||||||| |||||||||||||||| |  ||| ||| | |||||||||||| |||||    
T  23944095 ccattttcatcttaagaacatcaaacttcttcttctctttcattcaacatgtgatttccatctcctttattccagaatcgaatcatacttatc 23944187  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 140
Target Start/End: Complemental strand, 32962415 - 32962355
Alignment:
Q  80 atctctttcatttaacatgtgatttccatattttttgttctaaaatcgaatcatatttatc 140  Q
    ||||| || ||| ||||| |||| | |||||||||||||  ||||||||||||||||||||    
T  32962415 atctcctttattcaacatatgatctacatattttttgtttcaaaatcgaatcatatttatc 32962355  T

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Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 62 - 140
Target Start/End: Original strand, 41264562 - 41264640
Alignment:
Q  62 agaacatctattttcttgatctctttcatttaacatgtgatttccatattttttgttctaaaatcgaatcatatttatc 140  Q
    |||||||| | |||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  41264562 agaacatcaaatttcttcatctctttcatttaacttgagatttccatattttttgttctaaaatcgaatcatatttatc 41264640  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 41264430 - 41264471
Alignment:
Q  2 ttcattcaacatgtgatattcatatctttcgttatcataatc 43  Q
    ||||||||||||||||| ||||| ||||||||||||||||||    
T  41264430 ttcattcaacatgtgatcttcatctctttcgttatcataatc 41264471  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 140
Target Start/End: Original strand, 14138596 - 14138656
Alignment:
Q  80 atctctttcatttaacatgtgatttccatattttttgttctaaaatcgaatcatatttatc 140  Q
    |||||||||||| ||||||| || | ||| |||||||||  |||||||||| |||||||||    
T  14138596 atctctttcattcaacatgtaatcttcatcttttttgtttgaaaatcgaattatatttatc 14138656  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 140
Target Start/End: Original strand, 68130 - 68208
Alignment:
Q  62 agaacatctattttcttgatctctttcatttaacatgtgatttccatattttttgttctaaaatcgaatcatatttatc 140  Q
    ||||||||||  ||||| ||||| ||||||||||||||||| ||||| ||||| |||| |||||||||| |||||||||    
T  68130 agaacatctaacttcttcatctccttcatttaacatgtgatctccatctttttcgttccaaaatcgaatgatatttatc 68208  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 52432706 - 52432770
Alignment:
Q  74 ttcttgatctctttcatttaacatgtgatttccatattttttgttctaaaatcgaatcatattta 138  Q
    ||||| ||||| ||||||||||| ||||| ||||| |  ||||||||| |||||||| |||||||    
T  52432706 ttcttcatctccttcatttaacaagtgatctccatctaatttgttctataatcgaattatattta 52432770  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 7556135 - 7556093
Alignment:
Q  1 attcattcaacatgtgatattcatatctttcgttatcataatc 43  Q
    |||||||||||||||||| ||| ||||||||||||||||||||    
T  7556135 attcattcaacatgtgatcttcctatctttcgttatcataatc 7556093  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 189
Target Start/End: Complemental strand, 7555311 - 7555202
Alignment:
Q  81 tctctttcatttaacatgtgatttccatatt-ttttgttctaaaatcgaatcatatttatctgtaaggataaattacctcttatttaagaaggggtaacg 179  Q
    |||||||||||||| |||| | || ||| || |||| || | |||| ||||||||||| ||  ||  ||||||||||| |||||| |||||||||||||     
T  7555311 tctctttcatttaatatgtaaattgcattttattttatttttaaattgaatcatatttgtcattacagataaattaccccttattcaagaaggggtaaca 7555212  T
Q  180 tagtcctcac 189  Q
    |||| |||||    
T  7555211 tagttctcac 7555202  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 157
Target Start/End: Original strand, 32342651 - 32342728
Alignment:
Q  80 atctctttcatttaacatgtgatttccatattttttgttctaaaatcgaatcatatttatctgtaaggataaattacc 157  Q
    ||||| |||||| |||||| ||| || || ||||| |||| | |||| |||||||||||||  |||||||||||||||    
T  32342651 atctcattcattcaacatgcgatctctatttttttcgttccagaatcaaatcatatttatcattaaggataaattacc 32342728  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 140
Target Start/End: Original strand, 33897620 - 33897680
Alignment:
Q  80 atctctttcatttaacatgtgatttccatattttttgttctaaaatcgaatcatatttatc 140  Q
    ||||| ||||||||||||||||||| ||| ||||| ||||||||||| |||| | ||||||    
T  33897620 atctccttcatttaacatgtgatttacatctttttcgttctaaaatctaatcgtgtttatc 33897680  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 135
Target Start/End: Complemental strand, 35574699 - 35574609
Alignment:
Q  45 ttaccattttaaacttgagaacatctattttcttgatctctttcatttaacatgtgatttccatattttttgttctaaaatcgaatcatat 135  Q
    |||| ||||| | ||| |||||||| | ||| || ||||| |||||| ||||||| || ||||| ||||| |||| |||||||||||||||    
T  35574699 ttacgattttcatcttaagaacatcaaattttttcatctcattcattcaacatgtcatctccatctttttcgttccaaaatcgaatcatat 35574609  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 29969154 - 29969186
Alignment:
Q  2 ttcattcaacatgtgatattcatatctttcgtt 34  Q
    ||||||||||||||||||||||| |||||||||    
T  29969154 ttcattcaacatgtgatattcatctctttcgtt 29969186  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 182
Target Start/End: Original strand, 54437864 - 54437959
Alignment:
Q  87 tcatttaacatgtgatttccatattttttgttctaaaatcgaatcatatttatctgtaaggataaattacctcttatttaagaaggggtaacgtag 182  Q
    |||||||||| ||| ||||||| |||||  || ||||||| |||||||||||||  ||  | ||||||||| || ||| || ||||||||||||||    
T  54437864 tcatttaacacgtggtttccatctttttcattttaaaatcaaatcatatttatcattagaggtaaattacccctaattcaacaaggggtaacgtag 54437959  T

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