View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6567_low_27 (Length: 318)

Name: NF6567_low_27
Description: NF6567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6567_low_27
NF6567_low_27
[»] chr1 (2 HSPs)
chr1 (123-300)||(14175761-14175938)
chr1 (41-95)||(14175714-14175768)


Alignment Details
Target: chr1 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 123 - 300
Target Start/End: Original strand, 14175761 - 14175938
Alignment:
Q  123 gaagcttgatattgggattagcgaatcataatcgtttatcggctaaaattgaggtgggttcctttaggtttagcattaccaaatgtatttagtgtttggc 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14175761 gaagcttgatattgggattagcgaatcataatcgtttatcggctaaaattgaggtgggttcctttaggtttagcattaccaaatgtatttagtgtttggc 14175860  T
Q  223 caatttatgattagttactaactataggtttagataccaatataagaggagtgctaggtacccttgtactcctaatat 300  Q
    ||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  14175861 caatttatgattagttattaactataggtttagataccaaaataaaaggagtgctaggtacccttgtactcctaatat 14175938  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 14175714 - 14175768
Alignment:
Q  41 ttggtaagagtttggattgatggttggactgaatttgcagcttgcgggaggcttg 95  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  14175714 ttggtaagagtttggattgatggttggactgaatttggagcttgcgggaagcttg 14175768  T

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