View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6567_low_3 (Length: 592)
Name: NF6567_low_3
Description: NF6567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6567_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 40 - 408
Target Start/End: Original strand, 13032045 - 13032413
Alignment:
| Q |
40 |
tattgaacagtttcggtcaattaacaaattttatatgagaaggaaatttgatgcaaaatcacatacataataattttatggatacaccacgtcaacacaa |
139 |
Q |
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| T |
13032045 |
tattgaacagtttcggtcaattaacaaattttatatgagaaggaaatttgatgcaaaatcacatacataataattttatggatacaccacgtcaacacaa |
13032144 |
T |
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| Q |
140 |
agatcacaaaacataataatgaaaaaatccaattgttaatatcatcgtatcaagaaagataacaaaaaatcaagaatcaatttcctaaaaaatataattt |
239 |
Q |
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| T |
13032145 |
agatcacaaaacataataatgaaaaaatccaattgttaatatcatcgtatcaagaaagataataaaaaatcaagaatcaatttcctaaaaaatataattt |
13032244 |
T |
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| Q |
240 |
caaactgatactcgtatgttacgagagagtagaaattcaaattaaaaaagtgaggatttttcgagagttaatcaaacaaataaaaatttaatccnnnnnn |
339 |
Q |
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| T |
13032245 |
caaactgatactcgtatgttacgagagagtagaaattcaaattaaaaaagtgaggatttttcgagagttaatcaaacaaataaaaatttaatcctttttt |
13032344 |
T |
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| Q |
340 |
nnnnacgttgaatttagtcaaaataatgaaatgcatgcatatccaaattcaagatctgcaacattccat |
408 |
Q |
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| T |
13032345 |
tttcacgttgaatttagtcaaaataatgaaatgcatgcatatccaaattcaagatctgcaacatcccat |
13032413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 444 - 575
Target Start/End: Original strand, 13032414 - 13032545
Alignment:
| Q |
444 |
ataatttgaatttgcatgaaaccattaaccnnnnnnnacacaatcatttctaccaagatattgggggaaatgatgatcaggtcgaataataagcccaagt |
543 |
Q |
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| T |
13032414 |
ataatttgaatttgcatgaaaccattaacctttttttacacaatcatttctaccaagatattgggggaaatgatgatcaggtcgaataataagcccaagt |
13032513 |
T |
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| Q |
544 |
agaaagaataaaatcaaaataaatgaaagaac |
575 |
Q |
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| T |
13032514 |
agaaagaataaaatcaaaataaatgagagaac |
13032545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 40 - 173
Target Start/End: Complemental strand, 7418772 - 7418637
Alignment:
| Q |
40 |
tattgaacagtttcggtcaattaacaaattttatatgagaaggaaatttgatgcaaaatcacatacataataattttatggataca--ccacgtcaacac |
137 |
Q |
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| T |
7418772 |
tattgaacagtttcggtcaattaacaaattttatacgaggaggaaatttgatccaaaatcacacacataataattttatggatacaccccacgtcaacac |
7418673 |
T |
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| Q |
138 |
aaagatcacaaaacataataatgaaaaaatccaatt |
173 |
Q |
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| T |
7418672 |
aaagatcacaaaacataatagtgaaaaaatccaatt |
7418637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 165 - 302
Target Start/End: Complemental strand, 7418622 - 7418482
Alignment:
| Q |
165 |
aatccaattgttaatatcatcgtatcaagaaagataacaaaaaatcaagaatcaatttcctaaaaaa---tataatttcaaactgatactcgtatgttac |
261 |
Q |
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||||||| |||||||||||||||||||||||| |||| |||||||||||| |||||||||||| ||| ||||||||||||| ||||||||||||| || |
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| T |
7418622 |
aatccaactgttaatatcatcgtatcaagaaatataataaaaaatcaagagtcaatttcctaagaaaaattataatttcaaacagatactcgtatgtcac |
7418523 |
T |
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| Q |
262 |
gagagagtagaaattcaaattaaaaaagtgaggatttttcg |
302 |
Q |
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| T |
7418522 |
gagagggtaaaaattcaaactaaaaaagtgaggaattttcg |
7418482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 381 - 575
Target Start/End: Complemental strand, 7418481 - 7418289
Alignment:
| Q |
381 |
tccaaattcaagatctgcaacattccatcaataaaatagtttttgnnnnnnnnnttaacattaataatttgaatttgcatgaaaccattaaccnnnnnnn |
480 |
Q |
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| T |
7418481 |
tccaaattcaagatctgcaacatttcattaataaaatagttttt-caaaaaaaattaacattaataatttgaatttgcatgaa-ccatacaacttttttt |
7418384 |
T |
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| Q |
481 |
acacaatcatttctaccaagatattgggggaaatgatgatcaggtcgaataataagcccaagtagaaagaataaaatcaaaataaatgaaagaac |
575 |
Q |
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| T |
7418383 |
acacattcatttctaccaagaaattggtggaaatgatgataaggtggaaaaataagcccaagtagaaagaaatatatcaaaataaatgagagaac |
7418289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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