View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6567_low_31 (Length: 258)
Name: NF6567_low_31
Description: NF6567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6567_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 27325632 - 27325756
Alignment:
| Q |
1 |
cctaaccaaaaattaggtgtttgcacacaaaattaacaactagaacagtcccactcagaatgattatattcccaaggaggcaaagataatgagtaaacta |
100 |
Q |
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| T |
27325632 |
cctaacccaaaattaggtgtttgcacacaaaattaacaactagaacagtcccactcagaatgattatattcccaaggaggcaaagataatgagtaaacta |
27325731 |
T |
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| Q |
101 |
aacactaaacacattagcatgaagt |
125 |
Q |
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| T |
27325732 |
aacactaaacacattagcatgaagt |
27325756 |
T |
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Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 27325813 - 27325877
Alignment:
| Q |
182 |
ttatagaagataccttggagctttgatcagtgccacaccaaactctgaacttcctagtctctctg |
246 |
Q |
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| T |
27325813 |
ttatagaagataccttggagctttgatcagtgccacaccaaactctgaacttcctagtctctctg |
27325877 |
T |
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