View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6567_low_35 (Length: 234)
Name: NF6567_low_35
Description: NF6567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6567_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 43058079 - 43057910
Alignment:
| Q |
17 |
aatattttgaaagcaaattccacaaaaaatacaaaaatgctaaagtgcacgacagtctttttcgtgccatatgcacgacaatacaaaattgctttcattt |
116 |
Q |
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| T |
43058079 |
aatattttaagagcaaattccacaaaaaatacaaaaatgctcaagtgcacgacagtctttttcgtgccatatgcacgacaatacaaaattgctttcattt |
43057980 |
T |
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| Q |
117 |
taatttatttatgacttaaaatgacccagttaatatttatgtaattaaaattgtttatgaaaagtcacatta |
188 |
Q |
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| T |
43057979 |
taatttttttatgacttaaaatgacccagttaatatttaggtaatt--aattgtttatgaaaagtcacatta |
43057910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 17648963 - 17648900
Alignment:
| Q |
76 |
tttcgtgccatatgcacgacaatacaaaattgctttcattttaatttatttatgacttaaaatga |
140 |
Q |
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| T |
17648963 |
tttcgtgccaaatgtaggacagtacaaaat-gctttcattttaatttttgtatgacataaaatga |
17648900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 46 - 194
Target Start/End: Complemental strand, 21182861 - 21182715
Alignment:
| Q |
46 |
tacaaaaatgctaaagtgcacgacagtctttttcgtgccatatgcacgacaatacaaaattgctttcattttaatttatttatgacttaaaatgacccag |
145 |
Q |
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| T |
21182861 |
tacaaaaatgctaaagtgcacgacagtctttttcgtgtcaaatgcacgacagtacaaaattgctttcattttaatttttttatgacttaaaatgatccgg |
21182762 |
T |
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| Q |
146 |
ttaatatttatgtaattaaaattgtttatgaaaagtcacattacaactc |
194 |
Q |
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| T |
21182761 |
ttagtgtttaggtaatt--aattgtttatgaaaagtcaaattacaactc |
21182715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 47 - 194
Target Start/End: Complemental strand, 24905378 - 24905233
Alignment:
| Q |
47 |
acaaaaatgctaaagtgcacgacagtctttttcgtgccatatgcacgacaatacaaaattgctttcattttaatttatttatgacttaaaatgacccagt |
146 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||| || |||||||||||||| ||||| |
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| T |
24905378 |
acaaaaatgctaaagtgcacgacagtcttttttgtgccacatgcacgacagtacaaaattgctttcattttaattttttgatgacttaaaatgatccagt |
24905279 |
T |
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| Q |
147 |
taatatttatgtaattaaaattgtttatgaaaagtcacattacaactc |
194 |
Q |
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| T |
24905278 |
tagtgtttaggtaatt--aattgtttataaaaagtcacattacaactc |
24905233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 48 - 191
Target Start/End: Original strand, 31808126 - 31808267
Alignment:
| Q |
48 |
caaaaatgctaaagtgcacgacagtctttttcgtgccatatgcacgacaatacaaaattgctttcattttaatttatttatgacttaaaatgacccagtt |
147 |
Q |
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|||||||||||||||| |||| |||||||||| ||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| || ||| |
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| T |
31808126 |
caaaaatgctaaagtgtacgatagtctttttcatgccacatgcacgacagtacaaaattgctttcattttaatttttttatgacttaaaatgatcccgtt |
31808225 |
T |
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| Q |
148 |
aatatttatgtaattaaaattgtttatgaaaagtcacattacaa |
191 |
Q |
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| T |
31808226 |
agtgtttaggtaatt--aattgtttatgaaaagtcacattacaa |
31808267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 122
Target Start/End: Original strand, 32988498 - 32988570
Alignment:
| Q |
50 |
aaaatgctaaagtgcacgacagtctttttcgtgccatatgcacgacaatacaaaattgctttcattttaattt |
122 |
Q |
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| T |
32988498 |
aaaatgcttaagtgcacgataatatttttcgtgccaaatgcacgacaatgccaaactgcttttcttttaattt |
32988570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 16220264 - 16220193
Alignment:
| Q |
51 |
aaatgctaaagtgcacgacagtctttttcgtgccatatgcacgacaatacaaaattgctttcattttaattt |
122 |
Q |
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| T |
16220264 |
aaatgcttaagtgcacgataatatttttcgtgccaaatgcacgacaatgctaaactgcttttcttttaattt |
16220193 |
T |
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