View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6567_low_36 (Length: 215)
Name: NF6567_low_36
Description: NF6567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6567_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 23430409 - 23430316
Alignment:
| Q |
19 |
tatatatagatgaaaaatgaatgcc--aaccaggattgtctggtgtcaaagtttgttaggagattaactcacacctataaaattagaggtcaac |
110 |
Q |
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| T |
23430409 |
tatatatagatgaaaaatgaatgccccaaccaggattgtctggtgtcaaagtttgttaggagattaactcacacctataaaattagaggtcaac |
23430316 |
T |
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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 23438461 - 23438369
Alignment:
| Q |
19 |
tatatatagatgaaaaatgaatg----ccaaccaggattgtctggtgtcaaagtttgttaggagattaactcacacctataaaattagaggtcaac |
110 |
Q |
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| T |
23438461 |
tatatatagaagaaaaatgaatggacgccaaccatgattctctgctgtcaaagtttgttag---attaactcacatctataaaattagaagtcaac |
23438369 |
T |
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