View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6567_low_4 (Length: 584)
Name: NF6567_low_4
Description: NF6567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6567_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 18 - 579
Target Start/End: Original strand, 49168378 - 49168939
Alignment:
| Q |
18 |
attggtaactctaatgaaggaggtggagccgtggagcccctgatcaatgtgggtggaagtaaggaattttatcatgaagattataagttacaactttaga |
117 |
Q |
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| T |
49168378 |
attggtaactctaatgaaggaggtggagccgtggagcccctgatcaatgtgggtggaagtaaggaattttatcatgaagattataagttacaactttaga |
49168477 |
T |
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| Q |
118 |
gggttgaggggagtagcaaaaaagaaggatgtgtacaagtgatcgggaaaaataatccagatatattgtgtccaagaaactaaattagccgcggtgtata |
217 |
Q |
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| T |
49168478 |
gggttgaggggagtagcaaaaaagaaggatgtgtacaagtgatcgggaaaaataatccagatatattgtgtccaagaaactaaattagccgcggtgtata |
49168577 |
T |
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| Q |
218 |
ggaaagtttgcaaaattttgtgcggccaaggcatcagaggtaagatcaggaggactattggtgatttggaattataaaaatttaaaattacaatgtgagg |
317 |
Q |
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| T |
49168578 |
ggaaagtttgcaaaattttgtgcggccaaggcatcagaggtaagatcaggaggactattagtgatttggaattataaaaatttaaaattacaatgtgagg |
49168677 |
T |
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| Q |
318 |
ctagaggggatcattttatttgcttggatggattgtggggacaagaggaaactccagtttctatagtaaatgtatatgcaccttgtaaggcggggaggaa |
417 |
Q |
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| T |
49168678 |
ctagaggggatcattttatttgcttggatggattgtggggacaagaggaaactccagtttctatagtaaatgtatatgcaccttgtaaggcggggaggaa |
49168777 |
T |
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| Q |
418 |
aagatctgtgggataagttgaaagatttaatattgttgaaaccaggggaaaaatggtgtgaaatcagcgatttcaaatccatcggaacatctttagagag |
517 |
Q |
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| T |
49168778 |
aagatctgtgggataagttgaaagatttaatattgttgaaaccaggggaaaaatggtgtgaactcagcgatttcaaatccatcggaacatctttagagag |
49168877 |
T |
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| Q |
518 |
gaaaggaactggtgattttaaaagaatggaagagatgttggcctttaactcgttcatctcag |
579 |
Q |
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| T |
49168878 |
gaaaggaactggtgattttaaaagaatggaagagatgttggcctttaactcgttcatttcag |
49168939 |
T |
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