View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6567_low_8 (Length: 536)
Name: NF6567_low_8
Description: NF6567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6567_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 191 - 529
Target Start/End: Complemental strand, 12366192 - 12365854
Alignment:
| Q |
191 |
gtagattgctatattttacaagggcaaagcattgttgtcactgttgtcgcacaacagagataaaatgtttcagaaacgtcacgtcttgctagggccaaaa |
290 |
Q |
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| T |
12366192 |
gtagattgctatattttacaagggcaaagcattgttgtcactgttgtcgcacaacagagataaaatgtttcagaaacgtcacgtcttgctagggccaaaa |
12366093 |
T |
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| Q |
291 |
gcattaaaaggaagtaattatgaatgaatgattcacagttcagactctttaggataaagataaagttacactgacactacctactgacaactttcgtcac |
390 |
Q |
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| T |
12366092 |
gcattaaaaggaagtaattatgaatgaatgattcacagttcagactctttaggataaagataaagttacactgacactacctactgacaactttcgtcac |
12365993 |
T |
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| Q |
391 |
cacccactacgaccccttaactttcatacaattccactttggtcattaccatttcattttaattttaaacaaacctccaaaactcttgttattatttttc |
490 |
Q |
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| T |
12365992 |
cacccaccaccaccccttaactttcatacaattccactttggtcatcaccatttcattttaattttaaacaaacctccaaaactcttgttattaattttc |
12365893 |
T |
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| Q |
491 |
tatctatataaaggaataagaattacatcatattcttcg |
529 |
Q |
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| T |
12365892 |
tatctatataaaggaataagaattacatcatattgttcg |
12365854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 12366395 - 12366294
Alignment:
| Q |
1 |
cacaccaaacctcctgcattgcatgactgaaatccctttgaaaacttcttctcatcagcttagggttctcttggtcagtcagttatgaacaatatgttat |
100 |
Q |
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| T |
12366395 |
cacaccaaacctcctgcattgcatgactgaaatccctttgaaaacttcttctcatcagcttagggttctcttggtcagtctgttatgaacaatatgttat |
12366296 |
T |
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| Q |
101 |
aa |
102 |
Q |
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| T |
12366295 |
aa |
12366294 |
T |
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