View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6567_low_9 (Length: 506)
Name: NF6567_low_9
Description: NF6567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6567_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 33 - 492
Target Start/End: Complemental strand, 36571753 - 36571267
Alignment:
| Q |
33 |
tatagcatagtatccccttctcacacacacctttgcaaatttgggaccattttcaatatgatatcatccatcctacctatatatcttttg---------- |
122 |
Q |
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| T |
36571753 |
tatagcatagtatccccttctcacacacacctttgtaaatttgggaccattttgaatatgatatcatccatcctacctatatatcttttgagatcctctt |
36571654 |
T |
|
| Q |
123 |
-------taatactatgtatttttctttttctcttgtaaaagctaatccatttgctttgtatttttcaagctagggtgaatcttaaatgccagtacatgt |
215 |
Q |
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| T |
36571653 |
tcttttgtaatactatgtatttttctttttctcttgtaaaagctaatccatttgctttgtatttttcaagctagggtgaatcttaaatgccagtacatgt |
36571554 |
T |
|
| Q |
216 |
atgttccatctatcttcctagcttagcttctccact----aatg--ttaatta--------atatttcaatcattcgattgatctaacgacaaattaaca |
301 |
Q |
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|||||||||| ||||||||||||||||||||| |||| |||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
36571553 |
----tccatctatcatcctagcttagcttctccacttactaatgacttaaagatgatgaaaatatttcaatcattcgattgatctaacgacaaattaaca |
36571458 |
T |
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| Q |
302 |
ttgatttattacatgactagctagaaaggatctgaatcatagacaaaatatagcctaaacccaatcatgatatattcactttttatctctcaattaatgg |
401 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36571457 |
ttgaactattacatgactagctagaaaggatctgaatcatagacaaaatatagcctaaacccaatcatgatatattcactttttatctctcaattaatgg |
36571358 |
T |
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| Q |
402 |
tgtcgggacttgagatagacaaattgtagttagtggattaactagtgaatatatacgtaaaaagacgagtttgagagaagaaagtaaagtt |
492 |
Q |
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|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36571357 |
tgtcgggacttgagatggacaaattgtagatagtggattaactagtgaatatatacgtaaaaagacgagtttgagagaagaaagtaaagtt |
36571267 |
T |
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