View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6568_high_12 (Length: 293)
Name: NF6568_high_12
Description: NF6568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6568_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 1828230 - 1828008
Alignment:
| Q |
17 |
cagacacgtgtaattattgttagagtttctactcaaggtcggcaaatttgaacaa-gggatatctaaggttacaatcagatcattataagtctgcttcat |
115 |
Q |
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| T |
1828230 |
cagacacgtgtaattattgttagagtttctactcaaggtcagcaaatttgaagaaagggatatctaaggttacaatcagatcattataagtatgcttcat |
1828131 |
T |
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| Q |
116 |
tgccttcttcacattttataacaaaattatttagattgatgttttgcaaaattcttttagttagttgaattatataaatgttggatccttgattccggtg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1828130 |
tgccttcttcacattttataacaaaattatttagattgatgttttgcaaaattcttttagttagttgaattatataaatgttggatccttgattcaggtg |
1828031 |
T |
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| Q |
216 |
tgcaaaaattaaatttgtttaaa |
238 |
Q |
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||||||||||||||||||||||| |
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| T |
1828030 |
tgcaaaaattaaatttgtttaaa |
1828008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 120 - 234
Target Start/End: Complemental strand, 1835332 - 1835219
Alignment:
| Q |
120 |
ttcttcacattttataacaaaattatttagattgatgttttgcaaaattcttttagttagttgaattatataaatgttggatccttgattccggtgtgca |
219 |
Q |
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||||||||||||| ||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||| || ||||| |
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| T |
1835332 |
ttcttcacatttttaaacaagattatttagattgatgttttccaaaattcttt-agttagttgaattatataaatgttggatccctgattcaggggtgca |
1835234 |
T |
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| Q |
220 |
aaaattaaatttgtt |
234 |
Q |
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|| ||||||||||| |
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| T |
1835233 |
gaatttaaatttgtt |
1835219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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