View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6568_high_16 (Length: 271)
Name: NF6568_high_16
Description: NF6568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6568_high_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 21 - 264
Target Start/End: Complemental strand, 36465804 - 36465572
Alignment:
| Q |
21 |
aaagtcaacaaatcaatcaacatttttattatctttgtgtcatatgtggttgattttcgcctc-taactactttatttt-aacagcttctgaatacggtg |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||| |||| ||||||| | ||||| ||| |||||||||||||||| |
|
|
| T |
36465804 |
aaagtcaacaaatcaatcaacacttttactctctttgtgtcatatgtggttgattttcccctcctaactacctcatttttaacggcttctgaatacggtg |
36465705 |
T |
|
| Q |
119 |
aacttatacaatccatatacaatccatgcccaattaaaaaccaaccccttcaattnnnnnnnnnntagttataaaatcgtaggaaaccatacgaagctat |
218 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
36465704 |
aacttatacaatccat-----------gcccaattaaaaaccaaccccttcaattaaaaaaaa--tagttataaaatcgtaggaaactatacgaagctat |
36465618 |
T |
|
| Q |
219 |
acttggattgcgtgaatgcaatcatgaaatacatgaagaataattt |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36465617 |
acttggattgcgtgaatgcaatcatgaaatacatgaagaataattt |
36465572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University