View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6568_high_17 (Length: 267)
Name: NF6568_high_17
Description: NF6568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6568_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 31533945 - 31533693
Alignment:
| Q |
1 |
gacctattggtttcattgctaccttcaaccagtgacataacatgtgaagcccttttatctcaatcttcaatactatgtgtcactaattactccatcttta |
100 |
Q |
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| T |
31533945 |
gacctattggtttcattgctaccttcaaccagtgacataacatgtgaagcccttttatctcaatcttcaatactatgtgtcactaattactccatcttta |
31533846 |
T |
|
| Q |
101 |
aatttagttaatttatttttcttctgcagaagttaaaaactgctatgtataccatttatgtatgtttgtactctgttgcatgcttctgtgtaatgctgca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31533845 |
aatttagttaatttatttttcttctgcagaagttaaaaactgctatgtataccatttatgtatgtttgtactctgttgcatgcttctatgtaatgctgct |
31533746 |
T |
|
| Q |
201 |
tatag---caacttacggtatatatgtttttctgttctacaaacatttatctc |
250 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31533745 |
tatagcaacaacttacggtatatatgtttttctgttctacaaacatttatctc |
31533693 |
T |
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