View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6568_high_18 (Length: 265)

Name: NF6568_high_18
Description: NF6568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6568_high_18
NF6568_high_18
[»] chr8 (4 HSPs)
chr8 (147-254)||(32848022-32848129)
chr8 (3-91)||(32847937-32848025)
chr8 (55-234)||(11364555-11364737)
chr8 (84-248)||(9617871-9618043)
[»] chr7 (7 HSPs)
chr7 (68-236)||(29367291-29367463)
chr7 (89-238)||(32471143-32471301)
chr7 (51-232)||(42863670-42863854)
chr7 (84-139)||(29346783-29346838)
chr7 (167-251)||(35199381-35199465)
chr7 (51-129)||(3756740-3756816)
chr7 (86-129)||(39773360-39773403)
[»] chr5 (1 HSPs)
chr5 (51-238)||(34272322-34272511)
[»] chr3 (5 HSPs)
chr3 (141-250)||(531157-531268)
chr3 (141-250)||(564112-564223)
chr3 (55-111)||(564224-564280)
chr3 (55-111)||(531269-531325)
chr3 (145-238)||(46505965-46506057)
[»] chr1 (3 HSPs)
chr1 (68-198)||(29274555-29274690)
chr1 (166-236)||(49138139-49138208)
chr1 (86-129)||(12900877-12900920)
[»] chr6 (2 HSPs)
chr6 (53-254)||(29181546-29181753)
chr6 (141-191)||(15091898-15091948)
[»] chr4 (3 HSPs)
chr4 (85-231)||(4848782-4848930)
chr4 (158-238)||(45610619-45610699)
chr4 (87-129)||(49272661-49272703)


Alignment Details
Target: chr8 (Bit Score: 92; Significance: 9e-45; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 147 - 254
Target Start/End: Original strand, 32848022 - 32848129
Alignment:
Q  147 agatgagagagttcatcagttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatcatgagccac 246  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32848022 agatgagagagttcatcaattttcttgatacccattattgatcatcatttctctatttatgcacaatccaaacttccttgattttaggatcatgagccac 32848121  T
Q  247 atgttcat 254  Q
    ||||||||    
T  32848122 atgttcat 32848129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 32847937 - 32848025
Alignment:
Q  3 tttttcttgaaaaagattcataagcggaagaacctaaattgatagatgagagttggtgttcttaatacataaaagagataggaaaagat 91  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32847937 tttttcttgaaaaagattcataagcgggagaaccgaaattgatagatgagagttggtgttcttaatacataaaagagataggaaaagat 32848025  T

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Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 55 - 234
Target Start/End: Original strand, 11364555 - 11364737
Alignment:
Q  55 ttggtgttcttaatacataaaagagataggaaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagt---gagggagagatg 151  Q
    |||||||||||| |||||||||| || |||||||||||||||||||| ||||| ||||||||||||||||||||| |  ||||||    | || |||| |    
T  11364555 ttggtgttcttagtacataaaagggaaaggaaaagatagaagaagaccaagtcgaaagacttaagccattactctacttgagagtaccaaaggggagagg 11364654  T
Q  152 agagagttcatcagttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttagg 234  Q
    ||| | |   ||| |||||||||||||| ||| ||||||||| |||||||||||||||||||| || ||||||| ||||||||    
T  11364655 agatactatgtcatttttcttcataccccttagtgatcatcatttctctatttatgcacaatccaagcttccttaattttagg 11364737  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 248
Target Start/End: Original strand, 9617871 - 9618043
Alignment:
Q  84 gaaaagatagaagaagactaagtccaaagacttaagccattactc----ttcaagagagt----gagggagagatgagagagttcatcagttttcttcat 175  Q
    ||||||||||||||||||||| | |||| ||||||| ||||||||    | | |||||||     ||| ||||| || ||| ||| ||| ||||||||||    
T  9617871 gaaaagatagaagaagactaaatacaaaaacttaagtcattactccctatactagagagtaccacaggaagagaggaaagacttcttcatttttcttcat 9617970  T
Q  176 acccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatcatgagccacat 248  Q
    ||  ||| ||| |||||  ||  || ||||||||||||| ||||||| |||||| ||||||||  ||||||||    
T  9617971 acttattgttgttcatccttttcctgtttatgcacaatccaaacttcattgattctaggatcactagccacat 9618043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 236
Target Start/End: Original strand, 29367291 - 29367463
Alignment:
Q  68 tacataaaagagataggaaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagt----gagggagagatgagagagttcatc 163  Q
    ||||||||||||| ||  || |||||||||||||||||||| |||||||||| ||||||||| | |||||||     || ||||||||| ||| ||||||    
T  29367291 tacataaaagagaaagagaaggatagaagaagactaagtcctaagacttaagtcattactctactagagagtattaaagagagagatgatagacttcatc 29367390  T
Q  164 agttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggat 236  Q
    | ||||||||||||||| | |||||||||| ||| ||||||||| | || | ||| ||| || ||||||||||    
T  29367391 acttttcttcatacccactgttgatcatcatttcactatttatgtataacccaaagttctttaattttaggat 29367463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 89 - 238
Target Start/End: Original strand, 32471143 - 32471301
Alignment:
Q  89 gatagaagaagactaagtccaaagacttaagccattactcttcaagagagtg----agggagagatgagagagttcatcagttttcttcataccca---- 180  Q
    |||||||||||||||||| ||||||| ||||  |||||||   | ||||||     ||||||||| |||||| ||||||| ||||||||||| ||         
T  32471143 gatagaagaagactaagttcaaagacataagttattactcgcaaggagagtaccaaagggagagaggagagacttcatcaattttcttcataacccggcc 32471242  T
Q  181 -ttattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatca 238  Q
     | | ||||||||| |||||||||||||||||||| || ||||||||||||||||||||    
T  32471243 ctcagtgatcatcatttctctatttatgcacaatccaagcttccttgattttaggatca 32471301  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 232
Target Start/End: Complemental strand, 42863854 - 42863670
Alignment:
Q  51 agagttggtgttcttaatacataaaagagataggaaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagtg----agggag 146  Q
    ||||||||| |||||| |||| | |||| | || |||||||||||||||||  ||||| |||||||||| ||||||||| | |  |||||    | ||||    
T  42863854 agagttggtattcttagtaca-ataagaaaaagaaaaagatagaagaagacctagtcctaagacttaagtcattactctaccaatgagtgtcaaaaggag 42863756  T
Q  147 agatgagagagttcatcagttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgatttta 232  Q
    ||| |||||| ||  ||| |||||||||||||  ||| ||| ||||| | |||||||||||||||||| || ||||||| ||||||    
T  42863755 agaagagagacttggtcatttttcttcatacctcttagtgaccatcattcctctatttatgcacaatctaagcttccttaatttta 42863670  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 139
Target Start/End: Original strand, 29346783 - 29346838
Alignment:
Q  84 gaaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagt 139  Q
    ||||||||||||||||||| |||||||||||||||| |||||| ||  ||||||||    
T  29346783 gaaaagatagaagaagacttagtccaaagacttaagtcattaccctcaaagagagt 29346838  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 251
Target Start/End: Original strand, 35199381 - 35199465
Alignment:
Q  167 tttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatcatgagccacatgtt 251  Q
    |||||||||| | |||||||||||| | |||| ||||||||||||| | ||| ||||||  ||||| |||||  |||||||||||    
T  35199381 tttcttcatatcaattattgatcataatttctttatttatgcacaacccaaatttccttagttttaagatcactagccacatgtt 35199465  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 129
Target Start/End: Original strand, 3756740 - 3756816
Alignment:
Q  51 agagttggtgttcttaatacataaaagagataggaaaagatagaagaagactaagtccaaagacttaagccattactct 129  Q
    |||||||||||||||| ||||||||| | || |  ||||||||||||||||  ||||| | |||||||| |||||||||    
T  3756740 agagttggtgttcttagtacataaaaaaaatcg--aaagatagaagaagacctagtcctaggacttaagtcattactct 3756816  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 39773403 - 39773360
Alignment:
Q  86 aaagatagaagaagactaagtccaaagacttaagccattactct 129  Q
    ||||||||||||||||| |||| |||||| ||||||||||||||    
T  39773403 aaagatagaagaagacttagtctaaagacctaagccattactct 39773360  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 51 - 238
Target Start/End: Complemental strand, 34272511 - 34272322
Alignment:
Q  51 agagttggtgttcttaatacataaaagagataggaaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagtg----agggag 146  Q
    ||||||||||||||||| | |||||| ||| ||| ||| ||| |||||||||||||| ||||||||||| ||||||||||| |||||||     | ||||    
T  34272511 agagttggtgttcttaaaagataaaa-agaaagggaaatataaaagaagactaagtc-aaagacttaagtcattactcttctagagagtactaaatggag 34272414  T
Q  147 agatgagagag-ttcatcagttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatca 238  Q
    ||| |||| |  ||||||| ||||||||||||||||||||  | |||| || ||||||||||||||||| || | ||||||||||||||||||    
T  34272413 aga-gagaaaaattcatcaattttcttcatacccattattatttatcatttttctatttatgcacaatctaagcatccttgattttaggatca 34272322  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 141 - 250
Target Start/End: Complemental strand, 531268 - 531157
Alignment:
Q  141 agggagagatgagagagttcatcagttttcttcatacccattattgatcatcaatt--ctctatttatgcacaatcaaaacttccttgattttaggatca 238  Q
    ||||||||| |||||| ||||||| ||||||||||||||||||| |||||||| ||  |||| | |||||||| || || |||||||||||||||||||     
T  531268 agggagagaggagagacttcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttgattttaggatcg 531169  T
Q  239 tgagccacatgt 250  Q
    | |||| |||||    
T  531168 ttagccgcatgt 531157  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 141 - 250
Target Start/End: Complemental strand, 564223 - 564112
Alignment:
Q  141 agggagagatgagagagttcatcagttttcttcatacccattattgatcatcaatt--ctctatttatgcacaatcaaaacttccttgattttaggatca 238  Q
    ||||||||| |||||| ||||||| ||||||||||||||||||| |||||||| ||  |||| | |||||||| || || |||||||||||||||||||     
T  564223 agggagagaggagagacttcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttgattttaggatcg 564124  T
Q  239 tgagccacatgt 250  Q
    | |||| |||||    
T  564123 ttagccgcatgt 564112  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 564280 - 564224
Alignment:
Q  55 ttggtgttcttaatacataaaagagataggaaaagatagaagaagactaagtccaaa 111  Q
    |||||||||||| | ||||||||||| |||||||||||||||||||| |||||||||    
T  564280 ttggtgttcttagtgcataaaagagaaaggaaaagatagaagaagaccaagtccaaa 564224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 531325 - 531269
Alignment:
Q  55 ttggtgttcttaatacataaaagagataggaaaagatagaagaagactaagtccaaa 111  Q
    ||||||| |||| || |||||||||| |||||||||||||||||||| |||||||||    
T  531325 ttggtgtccttagtagataaaagagaaaggaaaagatagaagaagaccaagtccaaa 531269  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 238
Target Start/End: Complemental strand, 46506057 - 46505965
Alignment:
Q  145 agagatgagagagttcatcagttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatca 238  Q
    ||||| |||||| ||||||| | ||||||| ||||| |||||||| ||  ||| |||||||||||| ||| ||  |||||| ||||||||||||    
T  46506057 agagaggagagacttcatcaatattcttcacacccactattgatcctcctttcactatttatgcac-atccaaggttcctttattttaggatca 46505965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 29274690 - 29274555
Alignment:
Q  68 tacataaaagagataggaaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagt-------gagggagagatgagagagttc 160  Q
    ||||||||||| | || ||||||||||||||| |||||||||| ||||||| |||||||||| | |||||||       |||||||||  |||||| |||    
T  29274690 tacataaaagataaagaaaaagatagaagaaggctaagtccaaggacttaaaccattactctactagagagtatcaaaggagggagag--gagagacttc 29274593  T
Q  161 atcagttttcttcatacccattattgatcatcaattct 198  Q
    |||| | || |||||||| |||||||||||||| ||||    
T  29274592 atcattatttttcataccaattattgatcatcatttct 29274555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 49138208 - 49138139
Alignment:
Q  166 ttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggat 236  Q
    ||||||||||||||||||||||| |||| ||  ||||||||| |||||| || ||||||| ||||||||||    
T  49138208 ttttcttcatacccattattgat-atcattttcctatttatgtacaatccaagcttcctttattttaggat 49138139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 12900920 - 12900877
Alignment:
Q  86 aaagatagaagaagactaagtccaaagacttaagccattactct 129  Q
    ||||||||||||||||| ||| ||||||| ||||||||||||||    
T  12900920 aaagatagaagaagacttagttcaaagacctaagccattactct 12900877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 254
Target Start/End: Complemental strand, 29181753 - 29181546
Alignment:
Q  53 agttggtgttcttaatacataaaaga---gataggaaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagtg----aggga 145  Q
    |||||||||||||| |||||||||||   || | | ||||||| ||||| ||||||||| |||||| ||| ||||||||| | | |||||     |||||    
T  29181753 agttggtgttcttagtacataaaagaagagaaaaggaaagatacaagaaaactaagtcccaagact-aagtcattactctactaaagagtactaaaggga 29181655  T
Q  146 gagatgagagagttcatcagttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatcatgagcca 245  Q
    |||| |||||| | || || | |||||||  || |||||||||||| | ||  ||||||||||| |  | ||||||| |||||||||||||||  |||||    
T  29181654 gagaggagagactccagcaatattcttcacccctattattgatcattattttcctatttatgcatatcccaaacttctttgattttaggatcactagcca 29181555  T
Q  246 catgttcat 254  Q
    | |||||||    
T  29181554 cttgttcat 29181546  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 191
Target Start/End: Original strand, 15091898 - 15091948
Alignment:
Q  141 agggagagatgagagagttcatcagttttcttcatacccattattgatcat 191  Q
    ||||||||||||| || ||||||| ||||||||||| ||| ||||||||||    
T  15091898 agggagagatgagtgacttcatcaattttcttcatatccactattgatcat 15091948  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 231
Target Start/End: Complemental strand, 4848930 - 4848782
Alignment:
Q  85 aaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagt--gagggagagatgagagagttcatcagttttcttcatacccatt 182  Q
    |||| ||||| |||||||||||| ||||||||||| ||||||| | |||||||||   |  ||||||  ||||| |||| || |||||||  | || |||    
T  4848930 aaaatatagaggaagactaagtctaaagacttaagtcattactgtacaagagagtactaaagagagaaaagagatttcaacaattttctttgttcctatt 4848831  T
Q  183 attgatcatcaattctctatttatgcacaatcaaaacttccttgatttt 231  Q
    |||||||| || |||| || ||||||| |||| || |||||||||||||    
T  4848830 attgatcaccatttctatacttatgcataatccaagcttccttgatttt 4848782  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 238
Target Start/End: Complemental strand, 45610699 - 45610619
Alignment:
Q  158 ttcatcagttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatca 238  Q
    ||||||| | ||||||||| ||||||||||| |||  | | |||||||||||||| |||| |||||||||| |||| ||||    
T  45610699 ttcatcaatattcttcataaccattattgataatctttcccctatttatgcacaaccaaaccttccttgatcttagaatca 45610619  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 49272703 - 49272661
Alignment:
Q  87 aagatagaagaagactaagtccaaagacttaagccattactct 129  Q
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T  49272703 aagatagaagaagacttagtccaaaaacttaagtcattactct 49272661  T

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