View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6568_high_23 (Length: 239)
Name: NF6568_high_23
Description: NF6568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6568_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 51846715 - 51846500
Alignment:
| Q |
1 |
ttgttggttcaagatgctgaatcaattgaattaattaatctttcctaggactgcaactctcacctacaaaagcaactgttacatactaagctagcatatt |
100 |
Q |
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| T |
51846715 |
ttgttggttcaagatgctgaatcaattgaattaattaatctttcctaggactgcaactctcacctacaaaagcaactgttacatactaagctagcatatt |
51846616 |
T |
|
| Q |
101 |
gacattgacattgacattgacataaaaattgatcatattcatctttaaacttgtaattcctctatcctcctaattgcttccttcatgttaagtcgttgtt |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51846615 |
gacattgacattgacat------aaaaattgatcatattcatctttaaacttgtaattcctctatcctcctaattgcttccttcatgttaagtcgttgtt |
51846522 |
T |
|
| Q |
201 |
cagggttactttctgtgcaagc |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
51846521 |
cagggttactttctgtgcaagc |
51846500 |
T |
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