View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6568_high_24 (Length: 235)
Name: NF6568_high_24
Description: NF6568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6568_high_24 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 6 - 235
Target Start/End: Complemental strand, 42780578 - 42780349
Alignment:
| Q |
6 |
agagacttcatcaatgcgcggaaaaggaactccaagtattcctcagtactgaagacccgtctaaagaattcaacgattttcgctcaaaactagctggatt |
105 |
Q |
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| T |
42780578 |
agagacttcatcaatgcgcggaaaaggaactccaagtattcctcagtactgaagacccgtctaaagaattcaacgattttcgctcaaaactagctggatt |
42780479 |
T |
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| Q |
106 |
gaccagtgtgactaaaaacttcttcaagaatttggttagtgcattagagaatggtttatgtgatgtggatagtaatggagctgctacaagcaaagcaacg |
205 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42780478 |
gaccggtgtgactaaaaacttcttcaagaatttggttagtgcattagagaatggtttatgtgatgtggatagtaatggagctgctacaagcaaagcaacg |
42780379 |
T |
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| Q |
206 |
agtttnnnnnnnntgtcgcagggagcagta |
235 |
Q |
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| T |
42780378 |
agtttaaaaaaaatgtcgcagggagcagta |
42780349 |
T |
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Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 6 - 209
Target Start/End: Original strand, 29539264 - 29539467
Alignment:
| Q |
6 |
agagacttcatcaatgcgcggaaaaggaactccaagtattcctcagtactgaagacccgtctaaagaattcaacgattttcgctcaaaactagctggatt |
105 |
Q |
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| T |
29539264 |
agagacttcatctatgtgccgaaaaggaactccaagtattcctcagtgctgaaggcccctctaaagaattcaacgattttcgctcaaaactagctggatt |
29539363 |
T |
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| Q |
106 |
gaccagtgtgactaaaaacttcttcaagaatttggttagtgcattagagaatggtttatgtgatgtggatagtaatggagctgctacaagcaaagcaacg |
205 |
Q |
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| T |
29539364 |
gacccgtgtgactaaaaacttcttcgagaatttggttagggcattagagaatggtttaagtgatgtggatagtaatggagctgctacgagcaaagcaaag |
29539463 |
T |
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| Q |
206 |
agtt |
209 |
Q |
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|||| |
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| T |
29539464 |
agtt |
29539467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 6 - 182
Target Start/End: Original strand, 29554109 - 29554285
Alignment:
| Q |
6 |
agagacttcatcaatgcgcggaaaaggaactccaagtattcctcagtactgaagacccgtctaaagaattcaacgattttcgctcaaaactagctggatt |
105 |
Q |
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| T |
29554109 |
agagacttcatcaatgcgccgaaaaggaactccaagcattcctcagtgctgaagccccgtctgaaggattcaacaattttcgcagaaaactggctggatt |
29554208 |
T |
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| Q |
106 |
gaccagtgtgactaaaaacttcttcaagaatttggttagtgcattagagaatggtttatgtgatgtggatagtaatg |
182 |
Q |
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| T |
29554209 |
gaccagtgtgactaaaaacttctttgagaatttggttagggcattagagaatggtttatgtgatgtggatagtaatg |
29554285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 109 - 209
Target Start/End: Original strand, 42194659 - 42194759
Alignment:
| Q |
109 |
cagtgtgactaaaaacttcttcaagaatttggttagtgcattagagaatggtttatgtgatgtggatagtaatggagctgctacaagcaaagcaacgagt |
208 |
Q |
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| T |
42194659 |
cagtgtgactaaaaacttcttcgagaatttggtcagggcattagagaatggtttatgtgatgtggatagtaatggagctgctacaagcaaagcaacgagt |
42194758 |
T |
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| Q |
209 |
t |
209 |
Q |
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| T |
42194759 |
t |
42194759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 6 - 111
Target Start/End: Original strand, 42194106 - 42194211
Alignment:
| Q |
6 |
agagacttcatcaatgcgcggaaaaggaactccaagtattcctcagtactgaagacccgtctaaagaattcaacgattttcgctcaaaactagctggatt |
105 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
42194106 |
agagacttcatcaatgcgccgaaaaggaactccaagtattcctcagtgctgaaggcccgtctaaagaattcaacgattttcgcaccaaactagctggatt |
42194205 |
T |
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| Q |
106 |
gaccag |
111 |
Q |
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| T |
42194206 |
gaccag |
42194211 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 103
Target Start/End: Original strand, 25211930 - 25212027
Alignment:
| Q |
6 |
agagacttcatcaatgcgcggaaaaggaactccaagtattcctcagtactgaagacccgtctaaagaattcaacgattttcgctcaaaactagctgga |
103 |
Q |
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|||||||||||||||| || ||||| ||||| || |||||||| | |||||| || ||||||||||||||||| || || ||||| |||||||| |
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| T |
25211930 |
agagacttcatcaatgtgctgaaaaagaactacagcaattcctcactgctgaaggccaatctaaagaattcaacgacttccgtacaaaattagctgga |
25212027 |
T |
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