View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6568_high_26 (Length: 227)

Name: NF6568_high_26
Description: NF6568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6568_high_26
NF6568_high_26
[»] chr4 (3 HSPs)
chr4 (21-156)||(16572860-16572995)
chr4 (177-227)||(16574191-16574241)
chr4 (177-227)||(34660602-34660652)
[»] chr1 (4 HSPs)
chr1 (87-158)||(28020228-28020299)
chr1 (78-154)||(2066007-2066083)
chr1 (177-215)||(48857007-48857045)
chr1 (186-227)||(13074306-13074347)
[»] chr7 (2 HSPs)
chr7 (177-227)||(28462451-28462501)
chr7 (77-158)||(15126023-15126104)
[»] chr6 (4 HSPs)
chr6 (177-227)||(25439833-25439883)
chr6 (77-158)||(26198497-26198578)
chr6 (186-227)||(33131939-33131980)
chr6 (68-152)||(6059088-6059172)
[»] chr3 (3 HSPs)
chr3 (77-134)||(22908655-22908712)
chr3 (181-225)||(976968-977012)
chr3 (186-227)||(20488550-20488591)
[»] chr2 (3 HSPs)
chr2 (179-227)||(25283097-25283145)
chr2 (180-227)||(29794140-29794187)
chr2 (177-227)||(20245127-20245178)
[»] scaffold0002 (1 HSPs)
scaffold0002 (177-227)||(345721-345771)
[»] chr8 (2 HSPs)
chr8 (177-215)||(296943-296981)
chr8 (177-215)||(28875268-28875306)


Alignment Details
Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 21 - 156
Target Start/End: Original strand, 16572860 - 16572995
Alignment:
Q  21 gtacaaataggactcaccatcaagtgttttgatattcaagaattcaagcattggcggatttgcatatgtatttaggtgctgattttgtgaattctttatg 120  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||| || || | ||||| |||||||||||||||||||||||||||||||||| ||    
T  16572860 gtacaaataggactcaccaccaattgttttgatattcaagaattcaagtatcggtgaatttgtatatgtatttaggtgctgattttgtgaattctttgtg 16572959  T
Q  121 gtctctttggtacaacttatactaaagagattgctt 156  Q
    ||||||||| ||||||||||  ||||||||||||||    
T  16572960 gtctctttgatacaacttatgttaaagagattgctt 16572995  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 16574191 - 16574241
Alignment:
Q  177 aaaaattgattttaagtaattaaaatgaaatcagttacaaatggctgccac 227  Q
    ||||||||||||||| |||||||||||||||||||||||  ||||||||||    
T  16574191 aaaaattgattttaaataattaaaatgaaatcagttacacgtggctgccac 16574241  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 34660602 - 34660652
Alignment:
Q  177 aaaaattgattttaagtaattaaaatgaaatcagttacaaatggctgccac 227  Q
    ||||||||||||||| |||||||||||||||||||||||  ||||||||||    
T  34660602 aaaaattgattttaaataattaaaatgaaatcagttacacgtggctgccac 34660652  T

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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 87 - 158
Target Start/End: Complemental strand, 28020299 - 28020228
Alignment:
Q  87 tgtatttaggtgctgattttgtgaattctttatggtctctttggtacaacttatactaaagagattgcttgt 158  Q
    |||||| ||||||||||||||| ||||||| ||||||||||||||||| ||| | || ||||||||||||||    
T  28020299 tgtattcaggtgctgattttgtaaattcttcatggtctctttggtacaccttgtgctgaagagattgcttgt 28020228  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 154
Target Start/End: Original strand, 2066007 - 2066083
Alignment:
Q  78 atttgcatatgtatttaggtgctgattttgtgaattctttatggtctctttggtacaacttatactaaagagattgc 154  Q
    ||||| || |||||| |||||||||||||||  ||||||| |||||||||| ||||| ||| || | ||||||||||    
T  2066007 atttgtatctgtattcaggtgctgattttgtatattctttgtggtctctttagtacaccttgtaatcaagagattgc 2066083  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 215
Target Start/End: Original strand, 48857007 - 48857045
Alignment:
Q  177 aaaaattgattttaagtaattaaaatgaaatcagttaca 215  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  48857007 aaaaatttattttaaataattaaaatgaaatcagttaca 48857045  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 13074347 - 13074306
Alignment:
Q  186 ttttaagtaattaaaatgaaatcagttacaaatggctgccac 227  Q
    |||||| |||||||||||||||||||||||  ||||||||||    
T  13074347 ttttaaataattaaaatgaaatcagttacacgtggctgccac 13074306  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 28462451 - 28462501
Alignment:
Q  177 aaaaattgattttaagtaattaaaatgaaatcagttacaaatggctgccac 227  Q
    ||||||||||||||| |||||||||||||||||||||||  ||||||||||    
T  28462451 aaaaattgattttaaataattaaaatgaaatcagttacacgtggctgccac 28462501  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 15126023 - 15126104
Alignment:
Q  77 gatttgcatatgtatttaggtgctgattttgtgaattctttatggtctctttggtacaacttatactaaagagattgcttgt 158  Q
    |||||| |||||| || ||||||||| ||||| || |||||||| ||||||||||||| ||| | || ||||||||| ||||    
T  15126023 gatttgtatatgttttcaggtgctgactttgtaaaatctttatgttctctttggtacatcttgtgctgaagagattgtttgt 15126104  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 25439883 - 25439833
Alignment:
Q  177 aaaaattgattttaagtaattaaaatgaaatcagttacaaatggctgccac 227  Q
    ||||||||||||||| |||||||||||||||||||||||  ||||||||||    
T  25439883 aaaaattgattttaaataattaaaatgaaatcagttacacgtggctgccac 25439833  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 26198497 - 26198578
Alignment:
Q  77 gatttgcatatgtatttaggtgctgattttgtgaattctttatggtctctttggtacaacttatactaaagagattgcttgt 158  Q
    |||||| || |||||||| ||||||| ||||| |||| ||| ||||||||||| |||| ||||| |  ||||||||||||||    
T  26198497 gatttgtatttgtatttaagtgctgactttgtaaattttttgtggtctctttgatacaccttatgccgaagagattgcttgt 26198578  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 33131980 - 33131939
Alignment:
Q  186 ttttaagtaattaaaatgaaatcagttacaaatggctgccac 227  Q
    |||||| |||||||||||||||||||||||  ||||||||||    
T  33131980 ttttaaataattaaaatgaaatcagttacatgtggctgccac 33131939  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 6059088 - 6059172
Alignment:
Q  68 gcattggcggatttgcatatgtatttaggtgctgattttgtgaattctttatggtctctttggtacaacttatactaaagagatt 152  Q
    |||| ||| |||||| || |||||| |||| |||| ||||| |||||||  || ||||||||||||| ||| |||| ||||||||    
T  6059088 gcatcggctgatttgtatttgtattcaggtactgactttgtaaattcttcgtgatctctttggtacaccttgtactgaagagatt 6059172  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 22908655 - 22908712
Alignment:
Q  77 gatttgcatatgtatttaggtgctgattttgtgaattctttatggtctctttggtaca 134  Q
    |||||| |||||||||| |||||||| ||||| |||||||| ||||||||||||||||    
T  22908655 gatttgtatatgtattttggtgctgactttgtaaattctttgtggtctctttggtaca 22908712  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 977012 - 976968
Alignment:
Q  181 attgattttaagtaattaaaatgaaatcagttacaaatggctgcc 225  Q
    ||||||||||| |||||||||||||||||||||||  ||||||||    
T  977012 attgattttaaataattaaaatgaaatcagttacacgtggctgcc 976968  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 20488591 - 20488550
Alignment:
Q  186 ttttaagtaattaaaatgaaatcagttacaaatggctgccac 227  Q
    |||||| |||||||||||||||||||||||  ||||||||||    
T  20488591 ttttaaataattaaaatgaaatcagttacatgtggctgccac 20488550  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 25283097 - 25283145
Alignment:
Q  179 aaattgattttaagtaattaaaatgaaatcagttacaaatggctgccac 227  Q
    ||||||||||||| |||||||||||||||||||||||  ||||||||||    
T  25283097 aaattgattttaaataattaaaatgaaatcagttacacgtggctgccac 25283145  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 29794140 - 29794187
Alignment:
Q  180 aattgattttaagtaattaaaatgaaatcagttacaaatggctgccac 227  Q
    |||||||||||| |||||||||||||||||||||||  ||||||||||    
T  29794140 aattgattttaaataattaaaatgaaatcagttacacgtggctgccac 29794187  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 20245127 - 20245178
Alignment:
Q  177 aaaaattgattttaagtaattaaaatgaaatcag-ttacaaatggctgccac 227  Q
    ||||||||||||||| | |||||||||||||||| ||||| |||||||||||    
T  20245127 aaaaattgattttaaatgattaaaatgaaatcagtttacacatggctgccac 20245178  T

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Target: scaffold0002 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 345721 - 345771
Alignment:
Q  177 aaaaattgattttaagtaattaaaatgaaatcagttacaaatggctgccac 227  Q
    ||||||||||||||| ||||||||||||||||||||||   ||||||||||    
T  345721 aaaaattgattttaaataattaaaatgaaatcagttacgcgtggctgccac 345771  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 215
Target Start/End: Original strand, 296943 - 296981
Alignment:
Q  177 aaaaattgattttaagtaattaaaatgaaatcagttaca 215  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  296943 aaaaattgattttaaataattaaaatgaaatcagttaca 296981  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 215
Target Start/End: Original strand, 28875268 - 28875306
Alignment:
Q  177 aaaaattgattttaagtaattaaaatgaaatcagttaca 215  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  28875268 aaaaattgattttaaataattaaaatgaaataagttaca 28875306  T

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