View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6568_high_5 (Length: 446)
Name: NF6568_high_5
Description: NF6568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6568_high_5 |
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| [»] scaffold1731 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 16 - 430
Target Start/End: Complemental strand, 19401117 - 19400698
Alignment:
| Q |
16 |
ctcgaagatggtgatttgttgaagaaattcataggcagggttgacatacatttgtgaatggaaacaatatggaagtgtgtgataggttgttgtctaagat |
115 |
Q |
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| T |
19401117 |
ctcgaagatggtgatttgttgaagaaattcataggcagggttggcatacatttgtgaatggaagcaatatggaagtgtgtgataggttattgtctaagat |
19401018 |
T |
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| Q |
116 |
ggacactaatcctggaaattgttatgcgcaatttttgaaaagtaatgtttaatagttgtgtttgattgtgcaatttatgtcgaatttacttgttcctttt |
215 |
Q |
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| T |
19401017 |
ggacactaatcctggaaattgttatgcgcaatttttggaaagtaatgtttaatagttgtgtttgattgtgcaatttatgtcgaatttacttgttcctttt |
19400918 |
T |
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| Q |
216 |
tattgtgatgtgtgattgttagtttgtaatatgtttggtaagtaccttataattaattaattggtc-----tttgaattatgttgttgtgtctatttgta |
310 |
Q |
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| T |
19400917 |
tattgtgatgtgtgattgttagtttgtaatatgtttggtaagtaccttataattaattaattggtctgaattttgaattatgttgttgtgtctatttgta |
19400818 |
T |
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| Q |
311 |
atcactcaatattgaaattgtatgtgttttgtactattctttaattgaacttgtaatatcctttgtatgtgttttgtaatgtttacaatgaatggtatcg |
410 |
Q |
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| T |
19400817 |
atcactcaacattgaaattgtatgtgttttgtactatcctttaattgaacttgtaatatcctttgtatgtgttttgtaatgtttgcaatgaatggtatcg |
19400718 |
T |
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| Q |
411 |
tgtgtacgtgtttggagaag |
430 |
Q |
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| T |
19400717 |
tatgtacgtgtttgtagaag |
19400698 |
T |
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Target: scaffold1731 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1731
Description:
Target: scaffold1731; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 529 - 472
Alignment:
| Q |
110 |
taagatggacactaatcctggaaattgttatgcgcaatttttgaaaagtaatgtttaa |
167 |
Q |
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| T |
529 |
taagatggacactaattctggtaattgttatgtgcacttcatgaaaagtgatgtttaa |
472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 24904547 - 24904604
Alignment:
| Q |
110 |
taagatggacactaatcctggaaattgttatgcgcaatttttgaaaagtaatgtttaa |
167 |
Q |
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| T |
24904547 |
taagatggacactaattctggtaattgttatgtgcactttatggaaagtgatgtttaa |
24904604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 24907663 - 24907720
Alignment:
| Q |
110 |
taagatggacactaatcctggaaattgttatgcgcaatttttgaaaagtaatgtttaa |
167 |
Q |
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| T |
24907663 |
taagatggacactaattctggtaattgttatgtgcacttcatgaaaagtgatgtttaa |
24907720 |
T |
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