View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6568_high_8 (Length: 374)
Name: NF6568_high_8
Description: NF6568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6568_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 14 - 356
Target Start/End: Original strand, 2176670 - 2177015
Alignment:
| Q |
14 |
aaatacatttgactttttgaatattttttcttatatttcattctagagaggctatatgttggttcaagttgacagaatggtaactcggtccattgggagt |
113 |
Q |
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| T |
2176670 |
aaatacatttgactttttgaatattttttcttatatttcattctagagaggttatatgttggttcaagttgacagaatggtaactcggtccattgggagt |
2176769 |
T |
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| Q |
114 |
gctataagctcagaagcaacatccttgaatggaagaactcc---ttctttgcatttaaattttgacagtaacttagctgcttcttcctttgtcatcttca |
210 |
Q |
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| T |
2176770 |
gctataagttcagaagcaacatccttgaatggaagaactcctccttctttgcatttaaattttgacagtaacttagctgcttcttcctttgtcatcttta |
2176869 |
T |
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| Q |
211 |
ccttcactctagtaacattcatcctttctctttctcctaataattcatcaatataattactaccacagcttcttcttcctttcatcaactcatccttttc |
310 |
Q |
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| T |
2176870 |
ccttcactctagtaacattcatcctttctctttctcctaataattcatcaatataattactaccacagcttcttcttcctttcatcaactcatccttttc |
2176969 |
T |
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| Q |
311 |
atcttgttctgaatccgcaaaacgaacacttttcctaactcccttt |
356 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
2176970 |
atcttgttctgaatccgcaaaccgaacacttttcctaactgccttt |
2177015 |
T |
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