View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6568_low_10 (Length: 369)
Name: NF6568_low_10
Description: NF6568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6568_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 9 - 355
Target Start/End: Original strand, 1174370 - 1174716
Alignment:
| Q |
9 |
agcagagataatttttgccaaactctatgataacaaaagttgttttgcttgcactacaagaaaatcgcagatacggccaaaaacactcgaaaaggcttca |
108 |
Q |
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| T |
1174370 |
agcagagataatttttgccaaactctatgataacaaaagttgttttgcttgcactacaagaaaatcgcagatacggccaaaaacactcgaaaaggcttca |
1174469 |
T |
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| Q |
109 |
tacctcaggaatgataaattttccagtaagcaagcaaacagcaggaagagtacaatatgcaaccaaaggtattgatgtccatggatatacaatagcattt |
208 |
Q |
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| T |
1174470 |
tacctcaggaatgataaattttccagtaagcaagcaaacagcaggaagagtacaatatgcaaccaaaggtattgatgtccatggatatacaatagcattt |
1174569 |
T |
|
| Q |
209 |
atgtaagaaattctttctaaccactttaatcctcctttatatccataccaaataggacaatgtttactcatgaatatgtcaatggatccaagggcccatt |
308 |
Q |
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| T |
1174570 |
atgtaagaaattctttctaaccactttaatcctcctttatatccataccaaataggacaatgtttactcatgaatatgtcaatggatccaagggcccatt |
1174669 |
T |
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| Q |
309 |
gaaagacttgttgtagaccattagaaaggttatttgatgaagatact |
355 |
Q |
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| T |
1174670 |
gaaagacttgttgtagaccattagaaaggttatttgatgaagatact |
1174716 |
T |
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