View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6568_low_11 (Length: 353)

Name: NF6568_low_11
Description: NF6568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6568_low_11
NF6568_low_11
[»] chr8 (2 HSPs)
chr8 (19-353)||(37928311-37928645)
chr8 (143-238)||(13784210-13784305)
[»] chr3 (6 HSPs)
chr3 (145-232)||(7834068-7834155)
chr3 (153-242)||(19561457-19561546)
chr3 (145-197)||(39714828-39714880)
chr3 (145-197)||(39943774-39943826)
chr3 (153-199)||(25252918-25252964)
chr3 (143-196)||(2868834-2868887)
[»] chr7 (6 HSPs)
chr7 (145-194)||(39429503-39429552)
chr7 (145-198)||(18250688-18250741)
chr7 (145-198)||(17026040-17026093)
chr7 (145-198)||(20259972-20260025)
chr7 (150-198)||(31490742-31490790)
chr7 (145-197)||(43052328-43052380)
[»] chr4 (6 HSPs)
chr4 (164-241)||(54625836-54625913)
chr4 (145-198)||(51409156-51409209)
chr4 (152-197)||(52705639-52705684)
chr4 (145-197)||(44377651-44377703)
chr4 (145-197)||(49820424-49820476)
chr4 (153-197)||(50711491-50711535)
[»] chr6 (3 HSPs)
chr6 (153-198)||(13311393-13311438)
chr6 (129-197)||(6998622-6998690)
chr6 (164-228)||(8597464-8597528)
[»] scaffold0316 (1 HSPs)
scaffold0316 (145-197)||(18756-18808)
[»] chr1 (1 HSPs)
chr1 (145-199)||(21681664-21681718)
[»] scaffold0444 (1 HSPs)
scaffold0444 (145-197)||(1455-1507)
[»] chr5 (4 HSPs)
chr5 (145-197)||(18879666-18879718)
chr5 (153-197)||(28430595-28430639)
chr5 (145-197)||(31620007-31620059)
chr5 (145-197)||(32157427-32157479)


Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 19 - 353
Target Start/End: Original strand, 37928311 - 37928645
Alignment:
Q  19 gttatttacatgaaatattatctatgatttaagcaaatccatcataattttaataagttcgttaactaaatttgctaaacttgatatagtttgacttgtt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37928311 gttatttacatgaaatattatctatgatttaagcaaatccatcataattttaataagttcgttaactaaatttgctaaacttgatatagtttgacttgtt 37928410  T
Q  119 tgattcaagttgttcgtgaactttaatcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgagtttaaacgagtttgactcaac 218  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37928411 tgattcaagttgtttgtgaactttaatcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgagtttaaacgagtttgactcaac 37928510  T
Q  219 tcgattcatttccaaccctaattgggacgaaaaatcttaaatgacacttgatttgaaatgaatgaagtattatgagactgtcttatgaaaatggacaaat 318  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37928511 tcgattcatttccaaccctaattgggacgaaaaatcttaaatgatacttgatttgaaatgaatgaagtattatgagactgtcttatgaaaatggacaaat 37928610  T
Q  319 agttttatagaagaccctgtatatagaggatgtac 353  Q
    |||||||||||||||||||||||||||||||||||    
T  37928611 agttttatagaagaccctgtatatagaggatgtac 37928645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 13784305 - 13784210
Alignment:
Q  143 aatcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgagtttaaacgagtttgactcaactcgattcatttccaacccta 238  Q
    |||||| |||||||||| ||||||||||||  ||||||||| ||||||||||||| | | ||  ||| ||||| |||||| ||||||||| |||||    
T  13784305 aatcgtttcaaactcgagtcaagttttgagccgaaccaatttttatcgagtcgagctcagacaggttcgactcgactcgaatcatttccagcccta 13784210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 7834155 - 7834068
Alignment:
Q  145 tcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgagtttaaacgagtttgactcaactcgattcatttcca 232  Q
    |||| ||||||||||||  ||||||||| |||||||||||||||||||||||||| | ||  ||| ||||| |||||| |||||||||    
T  7834155 tcgtttcaaactcgaattgagttttgagctgaaccaattcttatcgagtcgagttcagacaggttcgactcgactcgactcatttcca 7834068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 242
Target Start/End: Original strand, 19561457 - 19561546
Alignment:
Q  153 aactcgaatcaagttttgagttgaaccaattcttatcgagtcgagtttaaacgagtttgactcaactcgattcatttccaaccctaattg 242  Q
    |||||||||| ||||||||  | ||| |||||||||||||||||| | | |||| ||  |||| |||||| ||||||||| |||||||||    
T  19561457 aactcgaatcgagttttgaactaaactaattcttatcgagtcgagctcagacgaattcaactcgactcgactcatttccagccctaattg 19561546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 39714880 - 39714828
Alignment:
Q  145 tcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgag 197  Q
    ||||||| ||||||| | |||||||||||||||| ||||||||| ||||||||    
T  39714880 tcgtgtcgaactcgagtaaagttttgagttgaactaattcttattgagtcgag 39714828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 39943774 - 39943826
Alignment:
Q  145 tcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgag 197  Q
    |||||||||||||||  | ||||| ||| ||||||||||||||||||||||||    
T  39943774 tcgtgtcaaactcgagccgagtttcgagctgaaccaattcttatcgagtcgag 39943826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 25252964 - 25252918
Alignment:
Q  153 aactcgaatcaagttttgagttgaaccaattcttatcgagtcgagtt 199  Q
    ||||||| || |||||||||  |||||||||||||||||||||||||    
T  25252964 aactcgagtcgagttttgagccgaaccaattcttatcgagtcgagtt 25252918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 2868834 - 2868887
Alignment:
Q  143 aatcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcga 196  Q
    |||||| |||||||| | || |||||| ||||||||||||| ||||||||||||    
T  2868834 aatcgtatcaaactctagtcgagttttaagttgaaccaatttttatcgagtcga 2868887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 39429552 - 39429503
Alignment:
Q  145 tcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtc 194  Q
    ||||||| |||||||||||||||| |||| ||||||||||||||||||||    
T  39429552 tcgtgtcgaactcgaatcaagtttcgagtcgaaccaattcttatcgagtc 39429503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 18250688 - 18250741
Alignment:
Q  145 tcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgagt 198  Q
    |||| |||||||||| |||||||| |||  ||||||||||||||||||||||||    
T  18250688 tcgtttcaaactcgagtcaagtttcgagccgaaccaattcttatcgagtcgagt 18250741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 17026040 - 17026093
Alignment:
Q  145 tcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgagt 198  Q
    |||| |||||||||| || ||||| |||  ||||||||||||||||||||||||    
T  17026040 tcgtttcaaactcgagtcgagtttcgagccgaaccaattcttatcgagtcgagt 17026093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 20259972 - 20260025
Alignment:
Q  145 tcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgagt 198  Q
    ||||||| |||||||  | |||||| || |||||||||||||||||||||||||    
T  20259972 tcgtgtcgaactcgagccgagttttaagctgaaccaattcttatcgagtcgagt 20260025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 31490790 - 31490742
Alignment:
Q  150 tcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgagt 198  Q
    |||||||||| |||| ||||||| |||||||||||||||| ||| ||||    
T  31490790 tcaaactcgagtcaaattttgagctgaaccaattcttatcaagttgagt 31490742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 43052380 - 43052328
Alignment:
Q  145 tcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgag 197  Q
    ||||||| |||||||  ||||||| |||  |||||||||||||||||||||||    
T  43052380 tcgtgtcgaactcgagccaagtttcgagccgaaccaattcttatcgagtcgag 43052328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 54625836 - 54625913
Alignment:
Q  164 agttttgagttgaaccaattcttatcgagtcgagtttaaacgagtttgactcaactcgattcatttccaaccctaatt 241  Q
    ||||||||||||||||||||||||| |||||||| |  ||| | || ||||| |||||| |||||||||||| |||||    
T  54625836 agttttgagttgaaccaattcttattgagtcgagctcgaacaaattcgactcgactcgactcatttccaaccataatt 54625913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 51409156 - 51409209
Alignment:
Q  145 tcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgagt 198  Q
    ||||||| |||||||||| ||||| |||  |||| |||||||||||||||||||    
T  51409156 tcgtgtcgaactcgaatcgagtttcgagccgaacaaattcttatcgagtcgagt 51409209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 52705684 - 52705639
Alignment:
Q  152 aaactcgaatcaagttttgagttgaaccaattcttatcgagtcgag 197  Q
    ||||||||||| ||||| |||  |||||||||||||||||||||||    
T  52705684 aaactcgaatcgagtttcgagccgaaccaattcttatcgagtcgag 52705639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 44377703 - 44377651
Alignment:
Q  145 tcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgag 197  Q
    |||| |||||||||| || ||||| |||  |||||||||||||||||||||||    
T  44377703 tcgtttcaaactcgagtcgagtttcgagccgaaccaattcttatcgagtcgag 44377651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 49820476 - 49820424
Alignment:
Q  145 tcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgag 197  Q
    ||||||| ||||||| || ||||| |||  |||||||||||||||||||||||    
T  49820476 tcgtgtcgaactcgagtcgagtttcgagccgaaccaattcttatcgagtcgag 49820424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 50711491 - 50711535
Alignment:
Q  153 aactcgaatcaagttttgagttgaaccaattcttatcgagtcgag 197  Q
    |||||||| | |||||||||  |||||||||||||||||||||||    
T  50711491 aactcgaaccgagttttgagccgaaccaattcttatcgagtcgag 50711535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 13311438 - 13311393
Alignment:
Q  153 aactcgaatcaagttttgagttgaaccaattcttatcgagtcgagt 198  Q
    |||||||| | |||||||||| ||||||||||||||||||||||||    
T  13311438 aactcgaaccgagttttgagtcgaaccaattcttatcgagtcgagt 13311393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 6998690 - 6998622
Alignment:
Q  129 tgttcgtgaactttaatcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgag 197  Q
    |||||||||||||||| || ||| ||||||| || ||||| |||  || | ||||||||||||||||||    
T  6998690 tgttcgtgaactttaaacgagtcgaactcgagtcgagtttcgagccgagcaaattcttatcgagtcgag 6998622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 8597464 - 8597528
Alignment:
Q  164 agttttgagttgaaccaattcttatcgagtcgagtttaaacgagtttgactcaactcgattcatt 228  Q
    ||||||||| |||||||||||||||| ||||||| ||| | || ||||| || |||||| |||||    
T  8597464 agttttgagctgaaccaattcttatctagtcgagcttagaagaatttgaatcgactcgaatcatt 8597528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 18808 - 18756
Alignment:
Q  145 tcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgag 197  Q
    ||||||| |||||||| | |||||||||  |||||||||||||||||||||||    
T  18808 tcgtgtcgaactcgaaccgagttttgagccgaaccaattcttatcgagtcgag 18756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 21681664 - 21681718
Alignment:
Q  145 tcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgagtt 199  Q
    ||||||| |||||||  | |||||| || ||||||||||||||||||||||||||    
T  21681664 tcgtgtcgaactcgagccgagttttaagctgaaccaattcttatcgagtcgagtt 21681718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0444 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 1455 - 1507
Alignment:
Q  145 tcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgag 197  Q
    |||| |||||||||| || ||||| |||  |||||||||||||||||||||||    
T  1455 tcgtttcaaactcgagtcgagtttcgagccgaaccaattcttatcgagtcgag 1507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 18879718 - 18879666
Alignment:
Q  145 tcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgag 197  Q
    ||||||| |||||||  ||||||| |||  |||||||||||||||||||||||    
T  18879718 tcgtgtcgaactcgagccaagtttcgagccgaaccaattcttatcgagtcgag 18879666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 28430639 - 28430595
Alignment:
Q  153 aactcgaatcaagttttgagttgaaccaattcttatcgagtcgag 197  Q
    ||||||| || ||||||||| ||||| ||||||||||||||||||    
T  28430639 aactcgagtcgagttttgagctgaactaattcttatcgagtcgag 28430595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 31620059 - 31620007
Alignment:
Q  145 tcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgag 197  Q
    |||||||||||| ||| | ||||||||| |||||||| ||||||||| |||||    
T  31620059 tcgtgtcaaacttgaaccgagttttgagctgaaccaaatcttatcgaatcgag 31620007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 32157427 - 32157479
Alignment:
Q  145 tcgtgtcaaactcgaatcaagttttgagttgaaccaattcttatcgagtcgag 197  Q
    ||||||| |||||||  ||||||| |||  |||||||||||||||||||||||    
T  32157427 tcgtgtcgaactcgagccaagtttcgagccgaaccaattcttatcgagtcgag 32157479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University