View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6568_low_14 (Length: 279)
Name: NF6568_low_14
Description: NF6568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6568_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 70 - 272
Target Start/End: Complemental strand, 17592257 - 17592051
Alignment:
| Q |
70 |
tattgctgtttaacttttgcaccttaatttcatgtcttgcttgttttggttgttgtccaattctgggagcatggcttctggttctgtcttgctcagtttg |
169 |
Q |
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| T |
17592257 |
tattgctgtttaacttttgcaccttaatttcatgtcttgcttgttttggttgttgtccaattctgggagcatgacttctggttctgtcttgctcagtttg |
17592158 |
T |
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| Q |
170 |
gtttggggtttctcctc---ggtggttccc-ttgctcgtggtttatttttctggttctttgcttgctgtggttcttacctttctcttgtaatgttactct |
265 |
Q |
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| T |
17592157 |
gtttggggtttctcctcgttggtggttccctttgctcgtggtttgtttttctggttctttgcttgttgtggttcttacctttctcttgtaatgttactct |
17592058 |
T |
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| Q |
266 |
ttctctg |
272 |
Q |
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||||||| |
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| T |
17592057 |
ttctctg |
17592051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 189 - 268
Target Start/End: Complemental strand, 17698488 - 17698409
Alignment:
| Q |
189 |
tggttcccttgctcgtggtttatttttctggttctttgcttgctgtggttcttacctttctcttgtaatgttactctttc |
268 |
Q |
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| T |
17698488 |
tggttacctggctcctggtttatttttctggttctttgcttgttgtggttcttacctttctcttgttttgttactctttc |
17698409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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