View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6568_low_15 (Length: 278)

Name: NF6568_low_15
Description: NF6568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6568_low_15
NF6568_low_15
[»] chr8 (3 HSPs)
chr8 (13-278)||(37928640-37928892)
chr8 (25-250)||(31686754-31686978)
chr8 (112-153)||(33282457-33282498)
[»] chr1 (6 HSPs)
chr1 (15-189)||(36098937-36099111)
chr1 (104-189)||(33136516-33136601)
chr1 (124-189)||(34703907-34703972)
chr1 (116-168)||(25392741-25392793)
chr1 (116-169)||(31069277-31069330)
chr1 (116-168)||(22583607-22583659)
[»] chr5 (6 HSPs)
chr5 (13-156)||(25325766-25325909)
chr5 (44-189)||(27483016-27483161)
chr5 (119-189)||(18967462-18967532)
chr5 (112-189)||(12863901-12863978)
chr5 (116-189)||(14921157-14921230)
chr5 (112-189)||(12831926-12832003)
[»] chr3 (2 HSPs)
chr3 (94-192)||(20017817-20017915)
chr3 (114-189)||(18689941-18690016)
[»] chr4 (4 HSPs)
chr4 (15-189)||(9830994-9831168)
chr4 (112-189)||(20510002-20510079)
chr4 (114-189)||(5760609-5760684)
chr4 (112-168)||(22652917-22652973)
[»] chr6 (5 HSPs)
chr6 (16-192)||(32197134-32197310)
chr6 (108-153)||(2682407-2682452)
chr6 (109-189)||(12687796-12687876)
chr6 (109-189)||(27104882-27104962)
chr6 (109-189)||(27146691-27146771)
[»] chr2 (4 HSPs)
chr2 (110-192)||(24739423-24739505)
chr2 (113-189)||(129539-129615)
chr2 (117-189)||(841966-842038)
chr2 (112-186)||(30505327-30505401)
[»] scaffold0094 (1 HSPs)
scaffold0094 (113-187)||(25335-25409)
[»] chr7 (5 HSPs)
chr7 (112-186)||(26569317-26569390)
chr7 (110-156)||(30295508-30295554)
chr7 (116-189)||(10275088-10275161)
chr7 (112-189)||(41528995-41529072)
chr7 (116-168)||(12092307-12092359)


Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 278
Target Start/End: Complemental strand, 37928892 - 37928640
Alignment:
Q  13 aatattacaatgtaaaaacaagtgctgggaagattcgattgaaccacacccagccacacacatccttgagtcacgatcaagaacaccatgccgatgcaaa 112  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  37928892 aatattacaatgtaaaaacaagtgctgggaagattcgatcgaaccacacccagccacacacatccttgagtcacgatcaagaacaccacgccgatgcaaa 37928793  T
Q  113 ttgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgccacaacgagtcaacaggaaccgatg 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||    
T  37928792 ttgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaac-------------tctttatgccacaacgagtcaacaggaaccgatg 37928706  T
Q  213 aaacaagtggaggatgaactgataggaaattatatgcatgattcacacttatattactaggtacat 278  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37928705 aaacaagtggaggatgaactgataggaaattatatgcacgattcacacttatattactaggtacat 37928640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 25 - 250
Target Start/End: Original strand, 31686754 - 31686978
Alignment:
Q  25 taaaaacaagtgctgggaagattcgattgaaccacacccagccacacacatccttgagtcacgatcaagaacaccatgccgatgcaaattgtcctttgta 124  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||| |||    
T  31686754 taaaaacaagtggtgggaagattcgatcgaaccacacccagccacacacatccttgcgtcacgatcaagaacaccacgccaatgcaaattgtcctt-gta 31686852  T
Q  125 ggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgccacaacgagtcaacaggaaccgatgaaacaagtggag 224  Q
    |||| | |||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||| |||  ||||||||||||||||||||| |||||    
T  31686853 ggcagcttgtctcggaacaaacgtcaagcaaacagcacaacctttaacaggacatctttatgccacatcgaagcaacaggaaccgatgaaacaaatggag 31686952  T
Q  225 gatgaactgataggaaattatatgca 250  Q
    ||||| ||||||||||||||||||||    
T  31686953 gatgagctgataggaaattatatgca 31686978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 153
Target Start/End: Complemental strand, 33282498 - 33282457
Alignment:
Q  112 attgtcctttgtaggcaacctgtctcggaacaaacgccaagc 153  Q
    ||||||||| ||||||||||||||||| ||||| ||||||||    
T  33282498 attgtccttcgtaggcaacctgtctcgaaacaaccgccaagc 33282457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 36098937 - 36099111
Alignment:
Q  15 tattacaatgtaaaaacaagtgctgggaagattcgattgaaccacacccagccacacacatccttgagtcacgatcaagaacaccatgccgatgcaaatt 114  Q
    |||||||||||||||| |||||||| || ||||| | |||| ||||||| |||||||| | |||||| |||||| ||||||||||| |  | |||| |||    
T  36098937 tattacaatgtaaaaataagtgctgagatgattcaactgaaacacaccctgccacacaaaaccttgaatcacgaccaagaacaccacgatgttgcagatt 36099036  T
Q  115 gtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgcca 189  Q
    ||||||||||||||||||||||| ||| || ||||||||||| |  |||||||| |  |||||||| ||||||||    
T  36099037 gtcctttgtaggcaacctgtctcagaataaccgccaagcaaacaaaacaaccttaagagggacatccttatgcca 36099111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 189
Target Start/End: Original strand, 33136516 - 33136601
Alignment:
Q  104 cgatgcaaattgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgcca 189  Q
    |||| |||||||||||| ||||||||||  || ||||||| |||||||||||| || |||||||| || || | ||| ||||||||    
T  33136516 cgatacaaattgtccttagtaggcaaccaatcacggaacagacgccaagcaaagagaacaaccttcaatggaatatccttatgcca 33136601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 34703907 - 34703972
Alignment:
Q  124 aggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgcca 189  Q
    ||||||||| |  |||||||||||||||||||| |  ||||||||||| || ||||||||||||||    
T  34703907 aggcaacctattccggaacaaacgccaagcaaataaaacaacctttaaaggaacatctttatgcca 34703972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 25392741 - 25392793
Alignment:
Q  116 tcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctt 168  Q
    ||||||||||||||||| || |||||||| ||||||||||| | |||||||||    
T  25392741 tcctttgtaggcaacctatcccggaacaaccgccaagcaaacaacacaacctt 25392793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 31069330 - 31069277
Alignment:
Q  116 tcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaaccttt 169  Q
    |||||||| |||||||| ||||| |||| || ||||||||||||||||| ||||    
T  31069330 tcctttgtgggcaacctatctcgaaacagacaccaagcaaaaagcacaaacttt 31069277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 22583607 - 22583659
Alignment:
Q  116 tcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctt 168  Q
    ||||||||| | ||||| ||||| |||| ||| ||||||||||||||||||||    
T  22583607 tcctttgtatgaaacctatctcgaaacagacgtcaagcaaaaagcacaacctt 22583659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 25325909 - 25325766
Alignment:
Q  13 aatattacaatgtaaaaacaagtgctgggaagattcgattgaaccacacccagccacacacatccttgagtcacgatcaagaacaccatgccgatgcaaa 112  Q
    ||||||||||||||| || || || ||||| ||||| |  |||||||||||||||||||||||||| || ||| |||||| ||||||  |  ||  ||||    
T  25325909 aatattacaatgtaagaataaatgatgggaggattcaaccgaaccacacccagccacacacatcctagaatcatgatcaataacaccgcgatgaaacaaa 25325810  T
Q  113 ttgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaa 156  Q
     |||| |||||||||||| ||||||  ||||| |||||||||||    
T  25325809 atgtcttttgtaggcaacttgtctctaaacaaccgccaagcaaa 25325766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 189
Target Start/End: Original strand, 27483016 - 27483161
Alignment:
Q  44 gattcgattgaaccacacccagccacacacatccttgagtcacgatcaagaacaccatgccgatgcaaattgtcctttgtaggcaacctgtctcggaaca 143  Q
    ||||| ||||||||||| || || ||||| | |||||| || ||||||| ||||||| |  ||||||  ||||| ||||||||||||||||| ||||| |    
T  27483016 gattcaattgaaccacaacctgcgacacaaagccttgaatctcgatcaataacaccacgatgatgcaggttgtcttttgtaggcaacctgtcacggaata 27483115  T
Q  144 aacgccaagcaaaaagcacaacctttaacgggacatctttatgcca 189  Q
    | |||||||| || |  |||||||| |  |||||||||||||||||    
T  27483116 accgccaagcgaacaaaacaaccttcagagggacatctttatgcca 27483161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 189
Target Start/End: Complemental strand, 18967532 - 18967462
Alignment:
Q  119 tttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgcca 189  Q
    ||||| |||||||| ||||| |||| |||||||||||||||||||||||| |  |||| ||| ||||||||    
T  18967532 tttgttggcaacctatctcgaaacatacgccaagcaaaaagcacaaccttcatagggatatccttatgcca 18967462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 189
Target Start/End: Original strand, 12863901 - 12863978
Alignment:
Q  112 attgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgcca 189  Q
    ||||||||| ||||| || || || |||||||||||||||||||| |  ||||||||||| || ||||| ||||||||    
T  12863901 attgtccttagtaggtaatctatcccggaacaaacgccaagcaaacaagacaacctttaaaggaacatccttatgcca 12863978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 14921157 - 14921230
Alignment:
Q  116 tcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgcca 189  Q
    ||||| || ||||||||||| || |||||||| ||||| ||||| ||||||||||  |||||||| ||||||||    
T  14921157 tccttagttggcaacctgtcacgaaacaaacgtcaagcgaaaagaacaacctttagagggacatccttatgcca 14921230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 189
Target Start/End: Original strand, 12831926 - 12832003
Alignment:
Q  112 attgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgcca 189  Q
    ||||||||| ||||| || || || |||||||||| ||||||||| |  ||||||||||| || ||||| ||||||||    
T  12831926 attgtccttagtaggtaatctatcccggaacaaacaccaagcaaacaagacaacctttaaaggaacatccttatgcca 12832003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 20017817 - 20017915
Alignment:
Q  94 aacaccatgccgatgcaaattgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgccacaa 192  Q
    ||||||| | ||||| | ||||||||| ||||||||||| || |||||||  |||||| |||| ||||||||||| || || |||||||||||||||||    
T  20017817 aacaccacgacgatgaagattgtccttagtaggcaacctatcacggaacagccgccaaccaaagagcacaaccttcaaaggaacatctttatgccacaa 20017915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 189
Target Start/End: Complemental strand, 18690016 - 18689941
Alignment:
Q  114 tgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgcca 189  Q
    ||||||| ||||||||||||||| | ||||| |||||| |||| ||||| |||||||  || ||||| ||||||||    
T  18690016 tgtccttcgtaggcaacctgtcttgaaacaaccgccaatcaaatagcaccacctttagaggaacatccttatgcca 18689941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 9831168 - 9830994
Alignment:
Q  15 tattacaatgtaaaaacaagtgctgggaagattcgattgaaccacacccagccacacacatccttgagtcacgatcaagaacaccatgccgatgcaaatt 114  Q
    |||||||||||||||| |||||||  || ||||| | |||| |||| || |||||||  | |||||| ||| || ||||||||||| |  | |||| |||    
T  9831168 tattacaatgtaaaaataagtgctatgatgattcaactgaatcacaacctgccacacgaaaccttgaatcatgaccaagaacaccacgatggtgcagatt 9831069  T
Q  115 gtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgcca 189  Q
    |||||||||||||||| |||| || || ||   ||||||||| |  |||||||| |  |||||||| ||||||||    
T  9831068 gtcctttgtaggcaacatgtcacgaaataactaccaagcaaataaaacaaccttcagagggacatccttatgcca 9830994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 20510079 - 20510002
Alignment:
Q  112 attgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgcca 189  Q
    ||||||||| ||||| || || || |||||||||||||||||||| |  ||||||||||| || ||||| ||||||||    
T  20510079 attgtccttagtaggtaatctatcccggaacaaacgccaagcaaacaagacaacctttaaaggaacatccttatgcca 20510002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 189
Target Start/End: Complemental strand, 5760684 - 5760609
Alignment:
Q  114 tgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgcca 189  Q
    ||||||| ||||||||||||||| | ||||| |||||| |||| ||||| |||||||  || ||||| ||||||||    
T  5760684 tgtccttcgtaggcaacctgtcttgaaacaaccgccaatcaaatagcaccacctttagaggaacatccttatgcca 5760609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 22652973 - 22652917
Alignment:
Q  112 attgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctt 168  Q
    ||||||||||||||||||||| || | |||||| ||||||| ||| | |||||||||    
T  22652973 attgtcctttgtaggcaacctatcccagaacaaccgccaagtaaacaacacaacctt 22652917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 32197134 - 32197310
Alignment:
Q  16 attacaatgtaaaaacaagtgctgggaagattcgattgaaccacacccagccacacacatccttgagtcacgatcaagaacaccatgccgatgcaaattg 115  Q
    ||||||||||||||| ||||| || || ||||| |  || ||||| |||| |||||||| ||| ||  |  |||||| ||| ||| | ||  | |||||     
T  32197134 attacaatgtaaaaataagtgttgagacgattccaacgatccacaaccagacacacacaacctggatgcttgatcaataacgccacgacggagtaaatta 32197233  T
Q  116 tcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgccacaa 192  Q
    || ||||| ||||| || ||| | ||||| ||||| ||||| ||||||||||| ||||| |||||||||||||||||    
T  32197234 tcttttgtgggcaatctatcttgaaacaagcgccacgcaaagagcacaaccttcaacggaacatctttatgccacaa 32197310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 153
Target Start/End: Complemental strand, 2682452 - 2682407
Alignment:
Q  108 gcaaattgtcctttgtaggcaacctgtctcggaacaaacgccaagc 153  Q
    |||||||||| ||||| ||||||||||||||||| || ||||||||    
T  2682452 gcaaattgtcttttgttggcaacctgtctcggaataaccgccaagc 2682407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 189
Target Start/End: Complemental strand, 12687876 - 12687796
Alignment:
Q  109 caaattgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgcca 189  Q
    |||||||||||||||||| || ||||  | || ||| ||||||||||| | ||| |||||||| || ||||| ||||||||    
T  12687876 caaattgtcctttgtaggtaatctgttcctgagcaaccgccaagcaaacaacaccacctttaaaggaacatccttatgcca 12687796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 189
Target Start/End: Complemental strand, 27104962 - 27104882
Alignment:
Q  109 caaattgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgcca 189  Q
    |||||||||||||||||| || |||   |||| ||| ||||||||||| | ||| |||||||| || ||||| ||||||||    
T  27104962 caaattgtcctttgtaggtaatctgctccggagcaaccgccaagcaaacaacaccacctttaaaggaacatccttatgcca 27104882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 189
Target Start/End: Complemental strand, 27146771 - 27146691
Alignment:
Q  109 caaattgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgcca 189  Q
    |||||||||||||||||| || |||   |||| ||| ||||||||||| | ||| |||||||| || ||||| ||||||||    
T  27146771 caaattgtcctttgtaggtaatctgctccggagcaaccgccaagcaaacaacaccacctttaaaggaacatccttatgcca 27146691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 192
Target Start/End: Complemental strand, 24739505 - 24739423
Alignment:
Q  110 aaattgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgccacaa 192  Q
    ||||||||||| || |||||||  || || || |||||||| ||||||||||| ||||| || |||||||| |||||||||||    
T  24739505 aaattgtccttcgttggcaaccgatcacgaaataaacgccacgcaaaaagcactaccttcaaggggacatccttatgccacaa 24739423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 129539 - 129615
Alignment:
Q  113 ttgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgcca 189  Q
    |||||||| || ||||||||||| ||||||||||||||||| || || |||||||| |  || ||||| ||||||||    
T  129539 ttgtccttagttggcaacctgtcacggaacaaacgccaagctaagagaacaaccttaagaggaacatccttatgcca 129615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 189
Target Start/End: Original strand, 841966 - 842038
Alignment:
Q  117 cctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgcca 189  Q
    |||||||||| | || ||| || |||| |||||| ||||||||||| ||||| || |||||||||||||||||    
T  841966 cctttgtaggaagccggtcacgaaacagacgccacgcaaaaagcaccaccttcaaagggacatctttatgcca 842038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 30505401 - 30505327
Alignment:
Q  112 attgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatg 186  Q
    ||||||||||||||||||||| || |||||||| | |||| |||| | ||||||||| |  |||||||| |||||    
T  30505401 attgtcctttgtaggcaacctatcccggaacaaccaccaaacaaacaacacaaccttcagagggacatccttatg 30505327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 25335 - 25409
Alignment:
Q  113 ttgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgc 187  Q
    |||||||| || |||| |||||| || |||||||||||||| ||||| |||||||| |  |||||||| ||||||    
T  25335 ttgtccttagttggcagcctgtcacgaaacaaacgccaagcgaaaagaacaaccttcagagggacatccttatgc 25409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 26569390 - 26569317
Alignment:
Q  112 attgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatg 186  Q
    ||||||||| ||||||| ||| || || ||||||||||||| ||||||||||| ||| ||||| ||||| |||||    
T  26569390 attgtccttagtaggca-cctatcccgaaacaaacgccaagaaaaaagcacaatcttcaacggaacatccttatg 26569317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 30295554 - 30295508
Alignment:
Q  110 aaattgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaa 156  Q
    ||||||||||||||||||||||| || || |||| ||||||||||||    
T  30295554 aaattgtcctttgtaggcaacctatcccgaaacatacgccaagcaaa 30295508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 10275161 - 10275088
Alignment:
Q  116 tcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgcca 189  Q
    |||||||| ||| |||| |  |||||||  ||||||| ||||| ||||||||| || |||||||||||||||||    
T  10275161 tcctttgttggcgacctattacggaacagccgccaagaaaaaatcacaaccttcaaagggacatctttatgcca 10275088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 41529072 - 41528995
Alignment:
Q  112 attgtcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctttaacgggacatctttatgcca 189  Q
    ||||||||| ||||| || || || |||||| || |||||||||| |  ||||||||||| || ||||||||||||||    
T  41529072 attgtccttagtaggtaatctatcccggaacgaatgccaagcaaacaagacaacctttaaaggaacatctttatgcca 41528995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 12092359 - 12092307
Alignment:
Q  116 tcctttgtaggcaacctgtctcggaacaaacgccaagcaaaaagcacaacctt 168  Q
    ||||||||||||||||  ||| | ||||| ||||||||||||||||| |||||    
T  12092359 tcctttgtaggcaaccaatcttgaaacaagcgccaagcaaaaagcacgacctt 12092307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University