View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6568_low_2 (Length: 585)

Name: NF6568_low_2
Description: NF6568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6568_low_2
NF6568_low_2
[»] chr8 (4 HSPs)
chr8 (14-581)||(39902738-39903304)
chr8 (273-325)||(9825277-9825329)
chr8 (273-320)||(27289842-27289889)
chr8 (198-259)||(30342772-30342833)
[»] chr6 (2 HSPs)
chr6 (212-307)||(14217142-14217237)
chr6 (380-446)||(14217310-14217376)
[»] chr4 (2 HSPs)
chr4 (137-259)||(29067856-29067977)
chr4 (406-451)||(12105553-12105598)
[»] chr1 (3 HSPs)
chr1 (220-320)||(10229090-10229193)
chr1 (207-270)||(27568717-27568780)
chr1 (406-451)||(28224307-28224352)
[»] chr3 (2 HSPs)
chr3 (273-317)||(32135150-32135194)
chr3 (273-327)||(38565603-38565657)
[»] chr7 (1 HSPs)
chr7 (289-324)||(6243608-6243643)
[»] chr2 (1 HSPs)
chr2 (220-259)||(9491794-9491833)
[»] chr5 (1 HSPs)
chr5 (184-259)||(28596272-28596348)


Alignment Details
Target: chr8 (Bit Score: 438; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 14 - 581
Target Start/End: Complemental strand, 39903304 - 39902738
Alignment:
Q  14 ctataatctcgaacacgtcatctacgaccacttcatttttctaaccggtccagtccaaaccaaaaatcaatgaagcaaaattagaaaaattaaaccattg 113  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39903304 ctataatctcgaacacgtcatctccgaccacttcatttttctaaccggtccggtccaaaccaaaaatcaatgaagcaaaattagaaaaattaaaccattg 39903205  T
Q  114 aaacattaattctaaccgatccagtccaaggggactaccactaaaataagggctttagacctccaaaaaatttaggcctcacattaggcctcggaatgtt 213  Q
    |||||||||||||||||||||||| ||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39903204 aaacattaattctaaccgatccagaccaagggggttaccactaaaataaggactttagacctccaaaaaatttaggcctcacattaggcctcggaatgtt 39903105  T
Q  214 ttttggtttaaatatattttcatgaatcaaattctttaaacattttagcacctagcttggttaaattaagagttgtagacttgtagtttatgttgcaagt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||  ||||||||||| ||||||||||||||||||||    
T  39903104 ttttggtttaaatatattttcatgaatcaaattctttaaacattttagcacctaatttggttaaatggagagttgtagatttgtagtttatgttgcaagt 39903005  T
Q  314 ttgatcttaaatgttttaannnnnnngtatgtattaaccttctagtttaaatgttcaaatgctgatcgtgagtgataccaataattagtatacgacatgc 413  Q
    |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  39903004 ttgatcttaaatgttttaa-ttttttgtatgtattaaccttctagtttaaatgttcaaatgctgatcgtgagtgataccaataattagtgttcgacatgc 39902906  T
Q  414 ctcaaataaaattactcattaaagattcttaatttttaatgtttctttgtcaatctattaaaaagcctcaattcaagttcgtttaggtctacaaatgcat 513  Q
    |||||||||||||||  ||| | |||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||| ||| ||||||||||||    
T  39902905 ctcaaataaaattacatatttatgattcttaatttttaatgtttctttgtcaacctattaaaaatcctcaattcaaattcgttcaggcctacaaatgcat 39902806  T
Q  514 tgggcttacgctggtttctaaaacagtataggttcctcaaaatttcacaaataccatcactcttttct 581  Q
    ||||||  | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39902805 tgggctatcactggtttctaaaacagtataggttcctcaaaatttcaaaaataccatcactcttttct 39902738  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 325
Target Start/End: Complemental strand, 9825329 - 9825277
Alignment:
Q  273 gttaaattaagagttgtagacttgtagtttatgttgcaagtttgatcttaaat 325  Q
    ||||||| ||||||| |||| |||| ||||||||||||||||||||| |||||    
T  9825329 gttaaatgaagagttatagagttgttgtttatgttgcaagtttgatcataaat 9825277  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 27289842 - 27289889
Alignment:
Q  273 gttaaattaagagttgtagacttgtagtttatgttgcaagtttgatct 320  Q
    ||||||| ||||||| ||||||| ||||| ||||||||||||||||||    
T  27289842 gttaaatgaagagttatagacttttagttcatgttgcaagtttgatct 27289889  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 259
Target Start/End: Original strand, 30342772 - 30342833
Alignment:
Q  198 taggcctcggaatgttttttggtttaaatatattttcatgaatcaaattctttaaacatttt 259  Q
    |||||||| |||| ||||| | ||||||||||||||||| | || |||| ||||||||||||    
T  30342772 taggcctctgaatatttttcgttttaaatatattttcataagtcgaattttttaaacatttt 30342833  T

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Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 212 - 307
Target Start/End: Original strand, 14217142 - 14217237
Alignment:
Q  212 ttttttggtttaaatatattttcatgaatcaaattctttaaacattttagcacctagcttggttaaattaagagttgtagacttgtagtttatgtt 307  Q
    ||||||| ||||||||||||||  ||| | |||||||||||| ||||| |||||||| ||| | ||||  |||||||||||||||||||| |||||    
T  14217142 ttttttgctttaaatatatttttgtgagttaaattctttaaatatttttgcacctagtttgatgaaatggagagttgtagacttgtagttcatgtt 14217237  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 380 - 446
Target Start/End: Original strand, 14217310 - 14217376
Alignment:
Q  380 cgtgagtgataccaataattagtatacgacatgcctcaaataaaattactcattaaagattcttaat 446  Q
    |||||| |||||| ||| |||||||  |||||||||||||||||||||| |||| ||||||||||||    
T  14217310 cgtgagcgatacccatatttagtatttgacatgcctcaaataaaattacacatttaagattcttaat 14217376  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 137 - 259
Target Start/End: Complemental strand, 29067977 - 29067856
Alignment:
Q  137 gtccaaggggactaccactaaaataagggctttagacctccaaaaaatttaggcctcacattaggcctcggaatgttttttggtttaaatatattttcat 236  Q
    |||||||||| || ||||||||  ||||| ||||| ||||||||   |||||| |||||| || | |||||||| ||||| | ||||||| ||||||| |    
T  29067977 gtccaagggg-ctgccactaaagcaagggttttaggcctccaaattttttaggtctcacaatatgtctcggaatctttttcgctttaaatctattttcgt 29067879  T
Q  237 gaatcaaattctttaaacatttt 259  Q
    || |||||||| |||||||||||    
T  29067878 gagtcaaattcattaaacatttt 29067856  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 406 - 451
Target Start/End: Original strand, 12105553 - 12105598
Alignment:
Q  406 cgacatgcctcaaataaaattactcattaaagattcttaattttta 451  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||    
T  12105553 cgacatgcctcaaataaaattacacatttaagattcttaattttta 12105598  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 220 - 320
Target Start/End: Complemental strand, 10229193 - 10229090
Alignment:
Q  220 tttaaatatattttcatgaatcaaattctttaaacatttta---gcacctagcttggttaaattaagagttgtagacttgtagtttatgttgcaagtttg 316  Q
    ||||| ||||||||| ||| | ||||||||||||||||||    || ||||||||||||||||  |||||| | ||||||||||| |||| | |||||||    
T  10229193 tttaagtatattttcgtgagttaaattctttaaacattttttttgcgcctagcttggttaaatggagagttattgacttgtagttcatgtcgtaagtttg 10229094  T
Q  317 atct 320  Q
    ||||    
T  10229093 atct 10229090  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 27568780 - 27568717
Alignment:
Q  207 gaatgttttttggtttaaatatattttcatgaatcaaattctttaaacattttagcacctagct 270  Q
    |||| ||||||  ||||||||||||||| | |||||||||| |||| |||||| ||||||||||    
T  27568780 gaatattttttactttaaatatattttcgtaaatcaaattccttaagcatttttgcacctagct 27568717  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 451
Target Start/End: Complemental strand, 28224352 - 28224307
Alignment:
Q  406 cgacatgcctcaaataaaattactcattaaagattcttaattttta 451  Q
    ||||||| ||||||||||||||| |||| ||||| |||||||||||    
T  28224352 cgacatgtctcaaataaaattacacatttaagatacttaattttta 28224307  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 32135150 - 32135194
Alignment:
Q  273 gttaaattaagagttgtagacttgtagtttatgttgcaagtttga 317  Q
    |||||||  ||||||||||||||||||||||||||||||||||||    
T  32135150 gttaaatggagagttgtagacttgtagtttatgttgcaagtttga 32135194  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 327
Target Start/End: Original strand, 38565603 - 38565657
Alignment:
Q  273 gttaaattaagagttgtagacttgtagtttatgttgcaagtttgatcttaaatgt 327  Q
    ||||||| |||||||||||||| || ||| ||||||  |||||||||||||||||    
T  38565603 gttaaatgaagagttgtagactcgtggttcatgttgtgagtttgatcttaaatgt 38565657  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 6243608 - 6243643
Alignment:
Q  289 tagacttgtagtttatgttgcaagtttgatcttaaa 324  Q
    |||||||||||||||||||| |||||||||||||||    
T  6243608 tagacttgtagtttatgttgtaagtttgatcttaaa 6243643  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 259
Target Start/End: Complemental strand, 9491833 - 9491794
Alignment:
Q  220 tttaaatatattttcatgaatcaaattctttaaacatttt 259  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  9491833 tttaaatatattttcataaatcaaattatttaaacatttt 9491794  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 184 - 259
Target Start/End: Complemental strand, 28596348 - 28596272
Alignment:
Q  184 tttaggcctcacattaggcct-cggaatgttttttggtttaaatatattttcatgaatcaaattctttaaacatttt 259  Q
    |||||| |||||||||||||| | |||| ||||| | |||||||| |||||| ||| | ||||||||||| ||||||    
T  28596348 tttaggtctcacattaggccttccgaatttttttcgctttaaatacattttcgtgagttaaattctttaagcatttt 28596272  T

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