View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6568_low_22 (Length: 240)
Name: NF6568_low_22
Description: NF6568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6568_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 26563524 - 26563743
Alignment:
| Q |
9 |
tcgaagaatatacgcggaggagctttctaaacgcctaatttcagagctgagcggaaagttagaggtaccagtgatcatgttattcaaattacgtgacttt |
108 |
Q |
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| T |
26563524 |
tcgaacaacatacgcggaggagctttctaaacgcctaatttcagagctgagcggaaagttagaggtaccagtgatcatgttattcaaattacatgacttt |
26563623 |
T |
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| Q |
109 |
atatcgtctactttatacacttttcgttgtttgtttatttttctgaaagtcaattttgtagccttataaatagataacttcgt-aaagagtatgttaagg |
207 |
Q |
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| T |
26563624 |
atatcgtctactttatacatttttcgttgtttgtttatttttctgaaagtcaattttgtagccttataagtatataacttcgtaaaagagtatgttaagg |
26563723 |
T |
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| Q |
208 |
aagagatcaatcttctacat |
227 |
Q |
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|||||||||||||||||||| |
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| T |
26563724 |
aagagatcaatcttctacat |
26563743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 26558193 - 26558251
Alignment:
| Q |
18 |
atacgcggaggagctttctaaacgcctaatttcagagctgagcggaaagttagaggtac |
76 |
Q |
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| T |
26558193 |
atacgcggaggagctttctaaatgcttagtttcagagctaagaggaaagttagaggtac |
26558251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 80 - 219
Target Start/End: Complemental strand, 50936328 - 50936189
Alignment:
| Q |
80 |
tgatcatgttattcaaattacgtgactttatatcgtctactttatacacttttcgttgtttgtttatttttctgaaagtcaattttgtagccttataaat |
179 |
Q |
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| T |
50936328 |
tgatcatgttattcaaattacatgactttttattttcttcttaatacatttttcattgtttgtttatttttctgaaagtcaattctgtagtcatataagt |
50936229 |
T |
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| Q |
180 |
agataacttcgtaaagagtatgttaaggaagagatcaatc |
219 |
Q |
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| T |
50936228 |
agataactttgtaaagtgtgtgttaaagaagagatcaatc |
50936189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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