View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6568_low_3 (Length: 540)
Name: NF6568_low_3
Description: NF6568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6568_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 504; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 13 - 531
Target Start/End: Complemental strand, 31201644 - 31201125
Alignment:
| Q |
13 |
aatatcttcgggataaacaagagaatggccagcaagtgaaagtgagattatatcaacaccatcactaatggcttgatcaatagcagctaatacatcggca |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31201644 |
aatatcttcgggataaacaagagaatggccagcaagtgaaagtgagattatatcaacaccatcactaatggcttgatcaatagcagctaatacatcggca |
31201545 |
T |
|
| Q |
113 |
ccaaagcagtcatcaagatctaacagagaccagcacactttgtaggttgcaaccctagctcttggcgaaccaccttttacagtaccattgccaatagcaa |
212 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31201544 |
ccaaagcagtcttcaagatctaacagagaccagcacactttgtaggttgcaaccctagctcttggcgaaccaccttttacagtaccattgccaatagcaa |
31201445 |
T |
|
| Q |
213 |
atacacttgcatctggtacaaagtttcccccagctgttgatagagtatgagtaccgtggcctaaaaagtcgcgtgcggtacgttgccatgagggaagctt |
312 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31201444 |
atacacttgcatctggtacaaagtttcccccagctgttgatagagtatgagtaccgtggcctaaaaagtcgcgtgcggtacgttgccatgagggaagctt |
31201345 |
T |
|
| Q |
313 |
gtcactgtatgcctcgtaagcattgctgaagaatctggctccaattagcttcctgtttatatataacaagaataattagtcctactccaatcagttttcc |
412 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31201344 |
gtcattgtatgcctcgtaagcattgctgaagaatctggctccaattagcttcctgtttatatataacaagaataattagtcctactccaatcagttttcc |
31201245 |
T |
|
| Q |
413 |
ctatcttggtaaccacggaaaaaatcagcatccgagggtctcaaactaaacg-ggtagtcctagtaggatctccggacacaggtgaaaattgacatttat |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31201244 |
ctatcttggtaaccacggaaaaaatcagcatccgagggtctcaaactaaacgaggtagtcctagtaggatctccggacacaggtgaaaattgacatttat |
31201145 |
T |
|
| Q |
512 |
atgaccacagatctcatcct |
531 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
31201144 |
atgaccacagatctcatcct |
31201125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 59 - 367
Target Start/End: Original strand, 31063570 - 31063878
Alignment:
| Q |
59 |
attatatcaacaccatcactaatggcttgatcaatagcagctaatacatcggcaccaaagcagtcatcaagatctaacagagaccagcacactttgtagg |
158 |
Q |
| |
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||||| |||||||||||| ||| |||||||||||||||| ||||||||| ||||||||||| | | |||| |||||||||||||||||||||| |
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| T |
31063570 |
attatgtcaacaccatcatcaattgcttgatcaatagcagataatacatcagcaccaaagcaactagcggcatctgttagagaccagcacactttgtagg |
31063669 |
T |
|
| Q |
159 |
ttgcaaccctagctcttggcgaaccaccttttacagtaccattgccaatagcaaatacacttgcatctggtacaaagtttcccccagctgttgatagagt |
258 |
Q |
| |
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||||||| ||||||||||| ||||| ||||||| |||||||| ||||| ||||| |||||| ||||||| |||||||| || ||||||||||| || |
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|
| T |
31063670 |
ttgcaactctagctcttggtgaacctccttttatggtaccatttccaatgttaaatatgcttgcacctggtacgaagtttccaccggctgttgatagtgt |
31063769 |
T |
|
| Q |
259 |
atgagtaccgtggcctaaaaagtcgcgtgcggtacgttgccatgagggaagcttgtcactgtatgcctcgtaagcattgctgaagaatctggctccaatt |
358 |
Q |
| |
|
|||||||||||| |||| |||||| ||||| ||||| ||| ||| |||||| ||| || | ||| ||| ||||||| |||||| ||||||||||||||| |
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| T |
31063770 |
atgagtaccgtgacctacaaagtcacgtgctgtacgctgcgatgtgggaagtttgccattatatcgctcataagcatcgctgaaaaatctggctccaatt |
31063869 |
T |
|
| Q |
359 |
agcttcctg |
367 |
Q |
| |
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||||||||| |
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|
| T |
31063870 |
agcttcctg |
31063878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 59 - 273
Target Start/End: Original strand, 31108657 - 31108871
Alignment:
| Q |
59 |
attatatcaacaccatcactaatggcttgatcaatagcagctaatacatcggcaccaaagcagtcatcaagatctaacagagaccagcacactttgtagg |
158 |
Q |
| |
|
||||| |||||||||||| ||| |||||||||||||||| ||||||||| ||||||||||| | |||| |||||||||||||||||||||| |
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|
| T |
31108657 |
attatgtcaacaccatcatcaattgcttgatcaatagcagataatacatcagcaccaaagcaactagtggcatctgttagagaccagcacactttgtagg |
31108756 |
T |
|
| Q |
159 |
ttgcaaccctagctcttggcgaaccaccttttacagtaccattgccaatagcaaatacacttgcatctggtacaaagtttcccccagctgttgatagagt |
258 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||||| |||||||| ||||| ||||| |||||| ||||||| || ||||| |||||||||||||| || |
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|
| T |
31108757 |
ttgcaactctagctcttggtgaacctccttttatggtaccatttccaatgttaaatatgcttgcacctggtacgaaatttccaccagctgttgatagtgt |
31108856 |
T |
|
| Q |
259 |
atgagtaccgtggcc |
273 |
Q |
| |
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|||||||| ||||| |
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| T |
31108857 |
gtgagtaccatggcc |
31108871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 83 - 282
Target Start/End: Original strand, 31146431 - 31146630
Alignment:
| Q |
83 |
gcttgatcaatagcagctaatacatcggcaccaaagcagtcatcaagatctaacagagaccagcacactttgtaggttgcaaccctagctcttggcgaac |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||| || |||||||||||||||| || | |||||| |||| |
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|
| T |
31146431 |
gcttgatcaatagcagctaatacatcggcaccaaagcagtctacaacatctgttagagaccaacatgctttgtaggttgcaactcttgatcttggtgaac |
31146530 |
T |
|
| Q |
183 |
caccttttacagtaccattgccaatagcaaatacacttgcatctggtacaaagtttcccccagctgttgatagagtatgagtaccgtggcctaaaaagtc |
282 |
Q |
| |
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||||||||| ||||| ||||||||| |||||| |||| | | |||| |||||||| || ||||||||||| || || || || ||||||| |||||| |
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| T |
31146531 |
caccttttatggtaccgttgccaataccaaatatggttgcgttttgtacgaagtttccacctgctgttgatagtgtgtgtgtcccatggcctacaaagtc |
31146630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 83 - 282
Target Start/End: Original strand, 31164257 - 31164456
Alignment:
| Q |
83 |
gcttgatcaatagcagctaatacatcggcaccaaagcagtcatcaagatctaacagagaccagcacactttgtaggttgcaaccctagctcttggcgaac |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||| |||| |||||||| || |||||||||||||||| || | |||||| |||| |
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|
| T |
31164257 |
gcttgatcaatagcagctaatacatcggcaccgaagcagtctacaacatctgttagagaccaacatgctttgtaggttgcaactcttgatcttggtgaac |
31164356 |
T |
|
| Q |
183 |
caccttttacagtaccattgccaatagcaaatacacttgcatctggtacaaagtttcccccagctgttgatagagtatgagtaccgtggcctaaaaagtc |
282 |
Q |
| |
|
||||||||| ||||| ||||||||| |||||| |||| | | |||| |||||||| || ||||||||||| || || || || ||||||| |||||| |
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|
| T |
31164357 |
caccttttatggtaccgttgccaataccaaatatggttgcgttttgtacgaagtttccacctgctgttgatagtgtgtgtgtcccatggcctacaaagtc |
31164456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 138 - 288
Target Start/End: Original strand, 31051196 - 31051346
Alignment:
| Q |
138 |
gagaccagcacactttgtaggttgcaaccctagctcttggcgaaccaccttttacagtaccattgccaatagcaaatacacttgcatctggtacaaagtt |
237 |
Q |
| |
|
||||||| ||||||||||||||| |||| || | | |||| ||||||||||| | ||||||||||| ||| |||||| |||||| ||||||| ||||| |
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|
| T |
31051196 |
gagaccaacacactttgtaggttacaactcttgattttggtgaaccacctttaatggtaccattgccgataccaaatatgcttgcacctggtacgaagtt |
31051295 |
T |
|
| Q |
238 |
tcccccagctgttgatagagtatgagtaccgtggcctaaaaagtcgcgtgc |
288 |
Q |
| |
|
||| |||||||||||||| || |||||||| ||||| ||||||| ||||| |
|
|
| T |
31051296 |
tccaccagctgttgatagtgtgtgagtaccatggccgtaaaagtcacgtgc |
31051346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 31051096 - 31051161
Alignment:
| Q |
50 |
gaaagtgagattatatcaacaccatcactaatggcttgatcaatagcagctaatacatcggcacca |
115 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||| |
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|
| T |
31051096 |
gaaactgagattatatcaacaccatcactaatggcttgatcgatagcagataatacatcagcacca |
31051161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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