View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6568_low_31 (Length: 220)
Name: NF6568_low_31
Description: NF6568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6568_low_31 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 101 - 220
Target Start/End: Original strand, 32480751 - 32480875
Alignment:
| Q |
101 |
tccaatcaaatagatataagttttaaacatctatacctgt-----actgtacataaagaggataccagattttggtactgccatttattctttcaatttt |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32480751 |
tccaatcaaatagatataagttttaaacatctatacctgtactgtactgtacataaagaagataccagattttggtactgccatttattctttcaatttt |
32480850 |
T |
|
| Q |
196 |
aacttttattcaaactattttgttt |
220 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
32480851 |
aacttttattcaaactattttgttt |
32480875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 32480652 - 32480690
Alignment:
| Q |
1 |
ctatatataatttatagtatcttacttacaattttggtg |
39 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32480652 |
ctatatataatttatagtatcttacttacaattttggtg |
32480690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University