View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6568_low_4 (Length: 527)
Name: NF6568_low_4
Description: NF6568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6568_low_4 |
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| [»] chr7 (3 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 254 - 527
Target Start/End: Original strand, 27511138 - 27511411
Alignment:
| Q |
254 |
ttcttctattcaaccttgacaataatcacattattgtcgttcctttcctccgtagtttccccatcctttattttaggcaaaacaaccttgagcacactac |
353 |
Q |
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| T |
27511138 |
ttcttctattcaaccttgacaataatcacattattgtcgttcctttcctccgtagtttccccatcctttattttaggcaaaacaaccttgagcacactac |
27511237 |
T |
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| Q |
354 |
atttcatcctagctctaatctgatcgatcttgtaatgtctcccagttaaatcatgcgtgcaagaggattcacgaccatctctcttgcctttaatgctaag |
453 |
Q |
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| T |
27511238 |
atttcatcctagctctaatctgatcgatcttgtaatgtctcccagttaaatcatgcgtgcaagaggattcacgaccacctctctcgcctttaatgctaag |
27511337 |
T |
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| Q |
454 |
agtattctgatacacgttgatattcacatcttccttaaagcgtccaggcacatacatacggataagcatataat |
527 |
Q |
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| T |
27511338 |
agtattctgatacacgttgatattcacatcttccttaaagcgtccaggcatatacatacggataagcatataat |
27511411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 27510017 - 27510148
Alignment:
| Q |
9 |
gaagaatatcgcaaaatcctttattttagaatttaattcgagattttaacatcagaattataaaaaagctaaattcattaattttcaagcagtcattaat |
108 |
Q |
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| T |
27510017 |
gaagaaaatcgcaaaatcctttattttagaatttaattcgatattttaacatcagaattataaaaaagctaaattcattaattttcaagcagtcattaat |
27510116 |
T |
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| Q |
109 |
gtttaacacagcaacactagtctatcaccatc |
140 |
Q |
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| T |
27510117 |
gtttaacacagcaacactagtctatcaccatc |
27510148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 27510969 - 27511005
Alignment:
| Q |
104 |
ttaatgtttaacacagcaacactagtctatcaccatc |
140 |
Q |
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| T |
27510969 |
ttaatatttaacacagcaacaccagtctatcaccatc |
27511005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 239 - 527
Target Start/End: Complemental strand, 78094 - 77818
Alignment:
| Q |
239 |
aatgaaaataccatattcttctattcaaccttgacaataatcacattattgtcgttcctttcctccgtagtttccccatcctttattttaggcaaaacaa |
338 |
Q |
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| T |
78094 |
aatgaaaagaccatattcttctattcaaccttgacaataatcacatcattgttgttccttccctctgtagtttccccatccttcattttaggcaaaacaa |
77995 |
T |
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| Q |
339 |
ccttgagcacactacatttcatcctagctctaatctgatcgatcttgtaatgtctcccagttaaatcatgcgtgcaagaggattcacgaccatctctctt |
438 |
Q |
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| T |
77994 |
ccttgagcacactacatttcatcttagctgtaatctaataaatcttgtaatgtttcccggttaaatcaagtctgctagaggatttacgaccacctcgctc |
77895 |
T |
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| Q |
439 |
gcctttaatgctaagagtattctgatacacgttgatattcacatcttccttaaagcgtccaggcacatacatacggataagcatataat |
527 |
Q |
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| T |
77894 |
acctttaatgctaagagtgttctgata------------cacatcttccttaatgcgtccaggcatatacatacgtataagcatataat |
77818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 318 - 503
Target Start/End: Original strand, 33702282 - 33702462
Alignment:
| Q |
318 |
cctttattttaggcaaaacaaccttgagcacactacatttcatcctagctctaatctgatcgatcttgtaatgtctcccagttaaatcatgcgtgcaaga |
417 |
Q |
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| T |
33702282 |
ccttcattttaggcaaaacaaccttgagcacactacatttcatcttagctctaatctgatcaatcttgtaagatttccctgttaaatcaagtgtgcaaga |
33702381 |
T |
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| Q |
418 |
ggattcacgaccatctctcttgcctttaatgctaagagtattctgatacacgttgatattcacatcttccttaaagcgtccaggca |
503 |
Q |
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| T |
33702382 |
ggatttacgaccacctctctcgcctttaatgctaagag-----tgttacacattgatattcacatcttccttcaagcgttcaggca |
33702462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 33702207 - 33702275
Alignment:
| Q |
70 |
aaaaaagctaaattcattaattttcaagcagtcattaatgtttaacacagcaacactagtctatcacca |
138 |
Q |
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| T |
33702207 |
aaaaaaacttaattcattagttttcagttagtcattaatgtttaacacagcaacactagtctatcacca |
33702275 |
T |
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