View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6568_low_5 (Length: 497)
Name: NF6568_low_5
Description: NF6568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6568_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 18 - 487
Target Start/End: Complemental strand, 37664987 - 37664518
Alignment:
| Q |
18 |
taatttgttatcaatcttcagttttagttgttttttctacttcatactttcatcaatgaatcaagtcaaactgcttgacaagtagcaaatatgannnnnn |
117 |
Q |
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| T |
37664987 |
taatttgttatcaatcttcagttttagttgttttttctacttcatactttcatcaatgaatcaagtcaaactgcttgacaagtagcaaatatgatatttt |
37664888 |
T |
|
| Q |
118 |
nnnattttctaaaacataaatatgacatgaatgtaactttctttnnnnnnnnttacatgaatgtatataaattacatttttacttggtagatgacaattt |
217 |
Q |
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| T |
37664887 |
tttattttctaaaacataaatatgacatgaatgtaactttctttaaaaaaaattacatgaatgtatataaattacatttttacttggtagattacaattt |
37664788 |
T |
|
| Q |
218 |
attaatccttatcgaaattgaattgaaattaattattttaaaaatattttctatacgtgtaaaacagcaataattctcttatttataattaataatagta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37664787 |
attaatccttatcgaaattgaattgaaattaattattttaaaaatattttctatacgtgtaaaacaacaataattctcttatttataattaataatagta |
37664688 |
T |
|
| Q |
318 |
gtgtacttcttagcaaggaagatctactatgattgtgaagaacaagaaagtgaaatgagcaatcggtaggaagaaggtggagaaagaacgtgagagataa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37664687 |
gtgtacttcttagcaaggaagatctactatgattgtgaagaacaagaaagtgaaatgagcaatcggtaggaagaaggtggagaaagaacgtgagagataa |
37664588 |
T |
|
| Q |
418 |
gtatcttagtagaggaagagataaataaaataagtatccatgtatttgagtttcaagacttaagtttcat |
487 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37664587 |
gtatcttagtagaggaagagacaaataaaataagtatccatgtatttgaatttcaagacttaagtttcat |
37664518 |
T |
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