View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6568_low_8 (Length: 375)

Name: NF6568_low_8
Description: NF6568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6568_low_8
NF6568_low_8
[»] chr4 (9 HSPs)
chr4 (20-364)||(54304045-54304389)
chr4 (32-209)||(47293438-47293609)
chr4 (21-209)||(55705863-55706045)
chr4 (52-191)||(45876748-45876881)
chr4 (52-209)||(56208543-56208694)
chr4 (52-154)||(45858817-45858919)
chr4 (251-345)||(45878693-45878780)
chr4 (240-281)||(56208883-56208924)
chr4 (293-345)||(45860212-45860264)
[»] chr5 (3 HSPs)
chr5 (50-152)||(35854575-35854677)
chr5 (21-141)||(10521345-10521465)
chr5 (292-345)||(35802756-35802809)
[»] chr2 (1 HSPs)
chr2 (52-153)||(24357487-24357588)
[»] chr8 (2 HSPs)
chr8 (50-199)||(7961716-7961859)
chr8 (50-209)||(7972086-7972239)


Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 20 - 364
Target Start/End: Complemental strand, 54304389 - 54304045
Alignment:
Q  20 attgagagttcaacaagagtaacctcactattttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaacca 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54304389 attgagagttcaacaagagtaacctcactattttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaacca 54304290  T
Q  120 aaccgagagatgttgcgtccttaccagtccaaaccttccccctcccctgtggaacctcttccattttgtctattgtcattgatttggaaaaggatctatt 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  54304289 aaccgagagatgttgcgtccttaccagtccaaaccttccccctcccctgtggaacctcttccattttgtctattgtcattgatttggaaaagtatctatt 54304190  T
Q  220 atttggactaaaa-aaccaactaaggtaatattttctgcaacaatagctcctgctcccgttgctaagtactaagtagtatcctgcacttgttgccacatc 318  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54304189 atttggactaaaagaaccaactaaggtaatattttctgcaacaatagctcctgctcccgttgctaagtactaagtagtatcctgcacttgttgccacatc 54304090  T
Q  319 agatattgaagcaatgacgggttttttcggcagcaagacgtttcat 364  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||    
T  54304089 agatattgaagcaatgatggg-tttttcggcagcaagacgtttcat 54304045  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 32 - 209
Target Start/End: Complemental strand, 47293609 - 47293438
Alignment:
Q  32 acaagagtaacctcactattttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatg 131  Q
    |||||||| ||||  || ||||||||||||||||||||||||||||||||||||||||| || || |  || ||||||||||||||||||||  |||||     
T  47293609 acaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatgagata 47293510  T
Q  132 ttgcgtccttaccagtccaaaccttccccctcccctgtggaacctcttccattttgtctattgtcattgatttggaaa 209  Q
     |||||||||||  |||||||       ||| ||||||| |||||||||||| |||||||| ||||||||| ||||||    
T  47293509 ctgcgtccttactggtccaaa------tccttccctgtgcaacctcttccatcttgtctatggtcattgatctggaaa 47293438  T

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Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 21 - 209
Target Start/End: Complemental strand, 55706045 - 55705863
Alignment:
Q  21 ttgagagttcaacaagagtaacctcactattttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaa 120  Q
    ||||||| || |||| | ||||||| || |||||||||||||| || ||||||||||  |||||||||||||| || ||||| |||||||||||||||||    
T  55706045 ttgagagctccacaacaataacctctctgttttgaggtatattagctttcaattttgtaatagcaatagcacgcgatatcccaccaatagcatcaaccaa 55705946  T
Q  121 accgagagatgttgcgtccttaccagtccaaaccttccccctcccctgtggaacctcttccattttgtctattgtcattgatttggaaa 209  Q
    |||  |||||| |||||| ||||| |||||||      ||||||| || | |||||||||||| |||||||| ||||| ||| ||||||    
T  55705945 accatgagatgctgcgtctttaccggtccaaa------ccctcccatgcgcaacctcttccatcttgtctatagtcatagatctggaaa 55705863  T

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Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 52 - 191
Target Start/End: Original strand, 45876748 - 45876881
Alignment:
Q  52 ttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtccaa 151  Q
    |||||||||||| || ||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||  | |||| ||| |||||||| ||||||    
T  45876748 ttgaggtatattagctttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccatgggatgctgcatccttaccggtccaa 45876847  T
Q  152 accttccccctcccctgtggaacctcttccattttgtcta 191  Q
    |      ||||||| |||| |||||||||||| |||||||    
T  45876848 a------ccctcccttgtgcaacctcttccatcttgtcta 45876881  T

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Target: chr4; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 52 - 209
Target Start/End: Original strand, 56208543 - 56208694
Alignment:
Q  52 ttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtccaa 151  Q
    ||||||||||   |||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| ||||||  ||| || ||||| ||| ||    
T  56208543 ttgaggtataccagccttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccaagagatagtgcatctttaccggtctaa 56208642  T
Q  152 accttccccctcccctgtggaacctcttccattttgtctattgtcattgatttggaaa 209  Q
    |      |||||||||||| |||||||||||| |  ||||| ||||||||| ||||||    
T  56208643 a------ccctcccctgtgcaacctcttccatctcatctatagtcattgatctggaaa 56208694  T

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Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 52 - 154
Target Start/End: Original strand, 45858817 - 45858919
Alignment:
Q  52 ttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtccaa 151  Q
    |||||||||||||||||||||||| ||||||||||||||||| || | ||| |||||||||||||||| |||  |||||  ||| |||||||| ||||||    
T  45858817 ttgaggtatattggccttcaatttggctatagcaatagcacgtgatagcccaccaatagcatcaaccagaccatgagatactgcatccttaccggtccaa 45858916  T
Q  152 acc 154  Q
    |||    
T  45858917 acc 45858919  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 251 - 345
Target Start/End: Original strand, 45878693 - 45878780
Alignment:
Q  251 tttctgcaacaatagctcctgctcccgttgctaagtactaagtagtatcctgcacttgttgccacatcagatattgaagcaatgacgggtttttt 345  Q
    |||||||||||||||||||||||||| |||| | |||       ||||||| |||||| |||||||||||| |||||||||||||| ||||||||    
T  45878693 tttctgcaacaatagctcctgctcccattgccatgta-------gtatcctccacttgctgccacatcagacattgaagcaatgactggtttttt 45878780  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 56208883 - 56208924
Alignment:
Q  240 taaggtaatattttctgcaacaatagctcctgctcccgttgc 281  Q
    |||||||| |||||||||||||||| ||||||||||| ||||    
T  56208883 taaggtaagattttctgcaacaataactcctgctcccattgc 56208924  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 45860212 - 45860264
Alignment:
Q  293 tagtatcctgcacttgttgccacatcagatattgaagcaatgacgggtttttt 345  Q
    ||||||||| |||| | |||||||||||| |||||||||||||  ||||||||    
T  45860212 tagtatcctccactagctgccacatcagacattgaagcaatgattggtttttt 45860264  T

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Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 50 - 152
Target Start/End: Complemental strand, 35854677 - 35854575
Alignment:
Q  50 ttttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtcc 149  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||  |||||| |||||||||||| ||||    
T  35854677 ttttgaggtatattggccttcaattttgctatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtccttaccggtcc 35854578  T
Q  150 aaa 152  Q
    |||    
T  35854577 aaa 35854575  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 21 - 141
Target Start/End: Complemental strand, 10521465 - 10521345
Alignment:
Q  21 ttgagagttcaacaagagtaacctcactattttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaa 120  Q
    ||||||| || |||||| ||||||   | |||||||||||||||||||| |||||||| |||||||||||||| || ||||| |||||||||||||||||    
T  10521465 ttgagagctcgacaagattaacctgtttgttttgaggtatattggccttgaattttgcgatagcaatagcacgcgatatcccaccaatagcatcaaccaa 10521366  T
Q  121 accgagagatgttgcgtcctt 141  Q
    |||  |||||| |||||||||    
T  10521365 accttgagatgctgcgtcctt 10521345  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 292 - 345
Target Start/End: Original strand, 35802756 - 35802809
Alignment:
Q  292 gtagtatcctgcacttgttgccacatcagatattgaagcaatgacgggtttttt 345  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  35802756 gtagtatcctgcacttgttgccgcatcagacattgaagcaatgacgggtttttt 35802809  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 52 - 153
Target Start/End: Complemental strand, 24357588 - 24357487
Alignment:
Q  52 ttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtccaa 151  Q
    |||||||||||||||||||||||||||||| |||||||| || || |  || ||||||||||||||||||||  | |||| ||| || ||||||||||||    
T  24357588 ttgaggtatattggccttcaattttgctatggcaatagctcgggaaaggccaccaatagcatcaaccaaaccatgtgatgctgcatctttaccagtccaa 24357489  T
Q  152 ac 153  Q
    ||    
T  24357488 ac 24357487  T

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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 50 - 199
Target Start/End: Original strand, 7961716 - 7961859
Alignment:
Q  50 ttttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtcc 149  Q
    |||||||| ||||||||||||||||||||||||||||||||  | || || || ||||||||||| |||||| |   |||| |||| || ||||||||||    
T  7961716 ttttgaggaatattggccttcaattttgctatagcaatagcgtgcgatattccaccaatagcatcgaccaaatcattagatattgcatctttaccagtcc 7961815  T
Q  150 aaaccttccccctcccctgtggaacctcttccattttgtctattgtcatt 199  Q
    |||  ||    ||||| |||| |||||||||||| |||||||| ||||||    
T  7961816 aaa--tt----ctcccttgtgcaacctcttccatcttgtctatagtcatt 7961859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 50 - 209
Target Start/End: Original strand, 7972086 - 7972239
Alignment:
Q  50 ttttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtcc 149  Q
    |||||||| | ||||||||||||||||||||||||||||||||| || |  || |  |||||||| ||||||||   ||||  ||| || ||||| ||||    
T  7972086 ttttgaggaagattggccttcaattttgctatagcaatagcacgcgatagtccactgatagcatcgaccaaaccattagatactgcatctttaccggtcc 7972185  T
Q  150 aaaccttccccctcccctgtggaacctcttccattttgtctattgtcattgatttggaaa 209  Q
    |||       ||||| ||||| |||||||||||| |||||||  ||||||||| ||||||    
T  7972186 aaa------tcctcctctgtgcaacctcttccatcttgtctacagtcattgatctggaaa 7972239  T

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