View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6569_high_15 (Length: 247)
Name: NF6569_high_15
Description: NF6569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6569_high_15 |
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| [»] scaffold0722 (1 HSPs) |
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Alignment Details
Target: scaffold0722 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: scaffold0722
Description:
Target: scaffold0722; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 2926 - 2707
Alignment:
| Q |
17 |
tgattttccttctctaaacaatcttaaattcctcaacatctcaaacaacaacttcaaatcttcaacttctctaaacaacttcatcaagaaatttggaaaa |
116 |
Q |
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| T |
2926 |
tgattttccttctctaaacaatcttaaattcctcaacatctcaaacaacaacttcaaatcttcaacttctctaaacaacttcatcaagaaatttggaaaa |
2827 |
T |
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| Q |
117 |
tcatcattcattcataacaacttcaatctcaaccactacaatacaaccaaaaaaccaaacattcattcaaattcaaattcaatatcaactctaaaacacc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2826 |
tcatcattcattcataacaacttcaatctcaaccactacaatactaccaaaaaaccaaacattcattcaaattcaaattcaatatcaactctaaaacacc |
2727 |
T |
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| Q |
217 |
gccaccaacaacaacttcat |
236 |
Q |
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||||||||||||||||||| |
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| T |
2726 |
accaccaacaacaacttcat |
2707 |
T |
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