View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6569_high_2 (Length: 620)
Name: NF6569_high_2
Description: NF6569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6569_high_2 |
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| [»] scaffold0259 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 124 - 587
Target Start/End: Complemental strand, 31993165 - 31992702
Alignment:
| Q |
124 |
actttcgctgactgccgggagggactacttgactatatgactgcaggcaatccagatccgaagctaatgagtaatgaaaaacatgtcacagttaattagc |
223 |
Q |
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| T |
31993165 |
actttcgccaactgccgggagggactacttgactatatgactgcaggcaatccagatccgaagctaatgagtaatgacaaacatgtcacagttaattagc |
31993066 |
T |
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| Q |
224 |
aaagttttacctgttaatgttctcccaaggtataacaaaaagcgatccttcctatgtagacttcaaggtataacattgttctttctttactgaattgata |
323 |
Q |
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| T |
31993065 |
aaagttttacctgttaatgttctcccaaggtataacaaaaagtgatccttcctatatagacttcaagatataacattgttctttatttactgaattgata |
31992966 |
T |
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| Q |
324 |
cataccaagagtttaagaattgagactaaacaatattgacttctccaattgatatcattaataataccatttctactctgacgaatttcatagtcaagaa |
423 |
Q |
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| T |
31992965 |
cataccaagagtttaagaattgaaactaaacaatattgacttctccaattgatatcattaataataccatttctactctgacgaatttcatagtcaagaa |
31992866 |
T |
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| Q |
424 |
tacaaaataggaaaataccaatgaaaatatacctcaattgacacaaccaaagaacaatgttgcaccaacatctggctctctaattttcttttgtaatgct |
523 |
Q |
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| T |
31992865 |
tacaaaataggaaaataccaatgaaaatatacctcaatcgacacaaccaaagaacaatgttgcaccaacgtctggctctctaattttcttttgtaatgct |
31992766 |
T |
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| Q |
524 |
tcatgatatttattgctcagcaaattacgagcaccgctcaataccgcgacaaaagaactaatat |
587 |
Q |
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| T |
31992765 |
tcatgatatttattgctcagcaaattacgagcaccactcaataccgcgacaaaagaactaatat |
31992702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 31993491 - 31993417
Alignment:
| Q |
23 |
catcggatataatctactgtggagatttaccttcttcaatcttttccactataaggaaacggcggagtattaaga |
97 |
Q |
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| T |
31993491 |
catcggatataatctaccgtggagatttaccttcttcaatcttttccactataaggaaacgacggagtattaaga |
31993417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 470 - 587
Target Start/End: Original strand, 49067436 - 49067553
Alignment:
| Q |
470 |
ccaaagaacaatgttgcaccaacatctggctctctaattttcttttgtaatgcttcatgatatttattgctcagcaaattacgagcaccgctcaataccg |
569 |
Q |
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| T |
49067436 |
ccaaagaacaactttgcaccaaggtttggctctctaattttctgttgtaatgcttcatgatattcattgctcagcaaactactagcaccgctcaataccg |
49067535 |
T |
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| Q |
570 |
cgacaaaagaactaatat |
587 |
Q |
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| T |
49067536 |
cgacaacagaactgatat |
49067553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 497 - 567
Target Start/End: Complemental strand, 19088 - 19018
Alignment:
| Q |
497 |
ggctctctaattttcttttgtaatgcttcatgatatttattgctcagcaaattacgagcaccgctcaatac |
567 |
Q |
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| T |
19088 |
ggctctctaattttctgttgtattgcttcatgatattcattgctcatcaaattactagcgccgctcaatac |
19018 |
T |
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