View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6569_high_24 (Length: 213)
Name: NF6569_high_24
Description: NF6569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6569_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 12 - 196
Target Start/End: Original strand, 42378271 - 42378454
Alignment:
| Q |
12 |
attattctcatcgttcttgatggcagaaatctctagtgcttattatggtattagagcctatcctagatcattagtttatagagtaacacccctcacctta |
111 |
Q |
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| T |
42378271 |
attattctcatcgttcttgatggcagaaatctctagtacttattatggtattagagc-tatcctagatcattagtatatagactgacacccctcacctta |
42378369 |
T |
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| Q |
112 |
caagccagttttgtaagctctgcccaaattctaacatgaaatcacattcaaagattttgccaataatgtctaataaggaaggagt |
196 |
Q |
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| T |
42378370 |
caagccagttttgtaagctctgcccaaattctaacatgaaatcacattcaaagattttgccaataatgtctaataaggaaggagt |
42378454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 12 - 196
Target Start/End: Original strand, 42406985 - 42407168
Alignment:
| Q |
12 |
attattctcatcgttcttgatggcagaaatctctagtgcttattatggtattagagcctatcctagatcattagtttatagagtaacacccctcacctta |
111 |
Q |
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| T |
42406985 |
attattctcatcgttcttgatggcagaaatctctagtacttattatggtattagagc-tatcctagatcattagtatatagactgacacccctcacctta |
42407083 |
T |
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| Q |
112 |
caagccagttttgtaagctctgcccaaattctaacatgaaatcacattcaaagattttgccaataatgtctaataaggaaggagt |
196 |
Q |
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| T |
42407084 |
caagccagttttgtaagctctgcccaaattctaacatgaaatcacattcaaagattttgccaataatgtctaataaggaaggagt |
42407168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 128
Target Start/End: Original strand, 50057088 - 50057118
Alignment:
| Q |
98 |
cacccctcaccttacaagccagttttgtaag |
128 |
Q |
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| T |
50057088 |
cacccctcaccttacaagccagttttgtaag |
50057118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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