View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6569_high_6 (Length: 445)

Name: NF6569_high_6
Description: NF6569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6569_high_6
NF6569_high_6
[»] chr7 (6 HSPs)
chr7 (48-418)||(37040607-37040987)
chr7 (48-188)||(15290273-15290412)
chr7 (48-167)||(12099062-12099183)
chr7 (48-164)||(12082080-12082198)
chr7 (49-138)||(2757392-2757483)
chr7 (1-33)||(37040588-37040620)
[»] chr4 (14 HSPs)
chr4 (48-232)||(14173933-14174121)
chr4 (48-232)||(14178687-14178875)
chr4 (48-232)||(28606987-28607175)
chr4 (48-232)||(28611749-28611937)
chr4 (48-232)||(11104465-11104652)
chr4 (48-232)||(44161582-44161768)
chr4 (48-167)||(48826878-48826999)
chr4 (226-292)||(28607181-28607247)
chr4 (226-292)||(28611943-28612009)
chr4 (1-33)||(14174108-14174140)
chr4 (1-33)||(14178862-14178894)
chr4 (1-33)||(28606968-28607000)
chr4 (1-33)||(28611730-28611762)
chr4 (1-33)||(48826859-48826891)
[»] chr8 (4 HSPs)
chr8 (48-232)||(12930672-12930860)
chr8 (48-232)||(12935418-12935606)
chr8 (1-33)||(12930847-12930879)
chr8 (1-33)||(12935593-12935625)
[»] chr1 (2 HSPs)
chr1 (48-232)||(34907135-34907323)
chr1 (1-33)||(34907310-34907342)
[»] chr5 (3 HSPs)
chr5 (48-232)||(42911170-42911358)
chr5 (48-232)||(29107056-29107242)
chr5 (1-33)||(29107037-29107069)
[»] chr2 (2 HSPs)
chr2 (48-232)||(8539179-8539369)
chr2 (307-357)||(8539050-8539100)
[»] chr3 (1 HSPs)
chr3 (85-232)||(51302157-51302306)
[»] chr6 (1 HSPs)
chr6 (16-91)||(2100695-2100771)


Alignment Details
Target: chr7 (Bit Score: 103; Significance: 4e-51; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 48 - 418
Target Start/End: Original strand, 37040607 - 37040987
Alignment:
Q  48 gaatattacaatattctctccactctctcttacac--aagagatacaatatagtgtgtttcataaaacccactcctatttaaatgctattattttatagc 145  Q
    ||||||||||||||| |||||||||||||  ||||  ||||||||||||||||||| || | | | ||| ||| |||||  |||||||||||||||||||    
T  37040607 gaatattacaatattttctccactctctcacacacacaagagatacaatatagtgttttccgtgagacctacttctattctaatgctattattttatagc 37040706  T
Q  146 acttaaaagttatatagatgatgcccacaaagtgtatttttcccacactc-ct-gatttacgcaacactctatttttcctct------------cacaca 231  Q
    || || |||||||| ||||||| |||||    |||||||||||||||||| || ||||||| ||||||||||||||||||||            ||||||    
T  37040707 acctagaagttatagagatgatacccacccgatgtatttttcccacactctctggatttactcaacactctatttttcctctcacacacttctacacaca 37040806  T
Q  232 cagaaactttatattttcacttcagcttcgatgtattccttcacaaccattgcctctattttctattcataagataaat-cagccgtaagagttggaaat 330  Q
    ||||| |||| |||||||||||| ||||| |||  ||||||||| | ||||| ||||||||       |||||| ||||  ||||||||||||||||  |    
T  37040807 cagaagctttgtattttcacttctgcttcaatgctttccttcactatcattgtctctattt-------ataagagaaatgaagccgtaagagttggattt 37040899  T
Q  331 atttcacac-cttttgcaccaaaagtcacatgacaaaaagtgtgaaacctgtaacaatagcaaaccttcaaacttgtatgcaccgaaag 418  Q
      ||||||| || || ||| ||||||||||  || |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  37040900 ggttcacacactcttacactaaaagtcacacaac-aaaagtgtgaaacctgtaacaatagcaaaccttcaaacttgtgtgcaccgaaag 37040987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 48 - 188
Target Start/End: Complemental strand, 15290412 - 15290273
Alignment:
Q  48 gaatattacaatattctctccactctct--cttacacaagagatacaatatagtgtgtttcataaaacccactcctatttaaatgctattattttatagc 145  Q
    ||||||||||||||||||||||||||||  |  ||||||||||||||||||||||| || | | | |||||||||||||  |||||||||||||   |||    
T  15290412 gaatattacaatattctctccactctcttacacacacaagagatacaatatagtgt-ttccgtgagacccactcctattcgaatgctattattt--cagc 15290316  T
Q  146 acttaaaagttatatagatgatgcccacaaagtgtatttttcc 188  Q
    || || |||||||| ||||||| |||||   ||||||||||||    
T  15290315 acctagaagttatagagatgatacccacccggtgtatttttcc 15290273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 48 - 167
Target Start/End: Complemental strand, 12099183 - 12099062
Alignment:
Q  48 gaatattacaatattctctccactctctcttac--acaagagatacaatatagtgtgtttcataaaacccactcctatttaaatgctattattttatagc 145  Q
    ||||||||||||||||||||||||||||   ||  |||||||| ||||||| |||| | |  | | || |||||||||| ||||| |||||||||||| |    
T  12099183 gaatattacaatattctctccactctcttacacgcacaagagacacaatattgtgtttctagtgagactcactcctattcaaatgatattattttataac 12099084  T
Q  146 acttaaaagttatatagatgat 167  Q
    || ||||||||||| |||||||    
T  12099083 acctaaaagttatagagatgat 12099062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 164
Target Start/End: Complemental strand, 12082198 - 12082080
Alignment:
Q  48 gaatattacaatattctctccactctctcttacac----aagagatacaatatagtgtgtttcataaaacccactcctatttaaatgctattattttata 143  Q
    ||||||||||||||| ||||||||||||  |||||    ||||||||||||||||||| | | || | || | |||||||| ||||| ||||||||||||    
T  12082198 gaatattacaatattttctccactctct--tacacggaaaagagatacaatatagtgtttctaatgagactcgctcctattcaaatgttattattttata 12082101  T
Q  144 gcacttaaaagttatatagat 164  Q
    || | || |||||||| ||||    
T  12082100 gcgcctagaagttatagagat 12082080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 138
Target Start/End: Original strand, 2757392 - 2757483
Alignment:
Q  49 aatattacaatattctctccactctctcttacac--aagagatacaatatagtgtgtttcataaaacccactcctatttaaatgctattatt 138  Q
    |||||| || ||||||||||||||||| | ||||  ||||||||||||||||||| |||  | | || ||||||||||||||| | ||||||    
T  2757392 aatattgcactattctctccactctctttcacactcaagagatacaatatagtgtttttagtgagacacactcctatttaaatacaattatt 2757483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 37040588 - 37040620
Alignment:
Q  1 aatattccactatattaaaaaatattacaatat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  37040588 aatattccactatattaaagaatattacaatat 37040620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 48 - 232
Target Start/End: Complemental strand, 14174121 - 14173933
Alignment:
Q  48 gaatattacaatattctctccactctctcttacaca--agagatacaatatagtgtgtttcataaaacccactcctatttaaatgctattattttatagc 145  Q
    |||||||||||||||||||||||||||||  |||||  |||||||||||||||||| |  | | | ||| ||| |||||  |||||||||||||||||||    
T  14174121 gaatattacaatattctctccactctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagc 14174022  T
Q  146 acttaaaagttatatagatgatgcccacaaagtgtatttttcccacactc-ct-gatttacgcaacactctatttttcctctcacacac 232  Q
    || || |||||||| ||||||| |||||   ||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||    
T  14174021 acctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcacacac 14173933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 48 - 232
Target Start/End: Complemental strand, 14178875 - 14178687
Alignment:
Q  48 gaatattacaatattctctccactctctcttacaca--agagatacaatatagtgtgtttcataaaacccactcctatttaaatgctattattttatagc 145  Q
    |||||||||||||||||||||||||||||  |||||  |||||||||||||||||| |  | | | ||| ||| |||||  |||||||||||||||||||    
T  14178875 gaatattacaatattctctccactctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagc 14178776  T
Q  146 acttaaaagttatatagatgatgcccacaaagtgtatttttcccacactc-ct-gatttacgcaacactctatttttcctctcacacac 232  Q
    || || |||||||| ||||||| |||||   ||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||    
T  14178775 acctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcacacac 14178687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 48 - 232
Target Start/End: Original strand, 28606987 - 28607175
Alignment:
Q  48 gaatattacaatattctctccactctctcttacaca--agagatacaatatagtgtgtttcataaaacccactcctatttaaatgctattattttatagc 145  Q
    |||||||||||||||||||||||||||||  |||||  |||||||||||||||||| |  | | | ||| ||| |||||  |||||||||||||||||||    
T  28606987 gaatattacaatattctctccactctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagc 28607086  T
Q  146 acttaaaagttatatagatgatgcccacaaagtgtatttttcccacactc-ct-gatttacgcaacactctatttttcctctcacacac 232  Q
    || || |||||||| ||||||| |||||   ||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||    
T  28607087 acctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcacacac 28607175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 48 - 232
Target Start/End: Original strand, 28611749 - 28611937
Alignment:
Q  48 gaatattacaatattctctccactctctcttacaca--agagatacaatatagtgtgtttcataaaacccactcctatttaaatgctattattttatagc 145  Q
    |||||||||||||||||||||||||||||  |||||  |||||||||||||||||| |  | | | ||| ||| |||||  |||||||||||||||||||    
T  28611749 gaatattacaatattctctccactctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagc 28611848  T
Q  146 acttaaaagttatatagatgatgcccacaaagtgtatttttcccacactc-ct-gatttacgcaacactctatttttcctctcacacac 232  Q
    || || |||||||| ||||||| |||||   ||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||    
T  28611849 acctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcacacac 28611937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 48 - 232
Target Start/End: Complemental strand, 11104652 - 11104465
Alignment:
Q  48 gaatattacaatattctctccactctctcttacacaa-gagatacaatatagtgtgtttcataaaacccactcctatttaaatgctattattttatagca 146  Q
    ||||||||||||||||||||||||||||   |||||| ||||||||||||||||| |  | | | ||||||||||||| |||||||||||||||||| ||    
T  11104652 gaatattacaatattctctccactctcttacacacaaagagatacaatatagtgtttcccgtgagacccactcctattcaaatgctattattttataaca 11104553  T
Q  147 cttaaaagttatatagatgatgcccacaaagtgtatttttcccacactc-ct-gatttacgcaacactctatttttcctctcacacac 232  Q
    | || |||||||| |||||||  ||||   |||||||||||| |||||| || ||||||| ||||||||||||||| |||||||||||    
T  11104552 cctagaagttatagagatgatatccacccggtgtatttttcctacactctctggatttactcaacactctattttttctctcacacac 11104465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 48 - 232
Target Start/End: Complemental strand, 44161768 - 44161582
Alignment:
Q  48 gaatattacaatattctctccactctct--cttacacaagagatacaatatagtgtgtttcataaaacccactcctatttaaatgctattattttatagc 145  Q
    ||||||||||||  ||||||||||||||  |  ||||||||||||||||||||||| |  | ||| ||| ||| |||||  |||||||||||||||||||    
T  44161768 gaatattacaat--tctctccactctcttacacacacaagagatacaatatagtgtttcccgtaagacctacttctattctaatgctattattttatagc 44161671  T
Q  146 acttaaaagttatatagatgatgcccacaaagtgtatttttcccacactc-ct-gatttacgcaacactctatttttcctctcacacac 232  Q
    || || |||||||| ||||||| |||||   ||||||||||||||||||| || ||||||| |||||||||||| ||||||||||||||    
T  44161670 acctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctattattcctctcacacac 44161582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 48 - 167
Target Start/End: Original strand, 48826878 - 48826999
Alignment:
Q  48 gaatattacaatattctctccactctct--cttacacaagagatacaatatagtgtgtttcataaaacccactcctatttaaatgctattattttatagc 145  Q
    ||||||||||||||||||| | ||||||  |  ||||||||||||||||||||||| |  | | | |  ||||||||||| |||||||||||||||||||    
T  48826878 gaatattacaatattctcttcgctctcttacacacacaagagatacaatatagtgtttcccgtgagattcactcctatttgaatgctattattttatagc 48826977  T
Q  146 acttaaaagttatatagatgat 167  Q
    || || |||||||| |||||||    
T  48826978 acctagaagttatagagatgat 48826999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 292
Target Start/End: Original strand, 28607181 - 28607247
Alignment:
Q  226 cacacacagaaactttatattttcacttcagcttcgatgtattccttcacaaccattgcctctattt 292  Q
    ||||||||||| |||| |||||||||||| |||||||||  ||||||||   |||||||||||||||    
T  28607181 cacacacagaagctttgtattttcacttctgcttcgatgctttccttcaattccattgcctctattt 28607247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 292
Target Start/End: Original strand, 28611943 - 28612009
Alignment:
Q  226 cacacacagaaactttatattttcacttcagcttcgatgtattccttcacaaccattgcctctattt 292  Q
    ||||||||||| |||| |||||||||||| |||||||||  ||||||||   |||||||||||||||    
T  28611943 cacacacagaagctttgtattttcacttctgcttcgatgctttccttcaattccattgcctctattt 28612009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 14174140 - 14174108
Alignment:
Q  1 aatattccactatattaaaaaatattacaatat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  14174140 aatattccactatattaaagaatattacaatat 14174108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 14178894 - 14178862
Alignment:
Q  1 aatattccactatattaaaaaatattacaatat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  14178894 aatattccactatattaaagaatattacaatat 14178862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 28606968 - 28607000
Alignment:
Q  1 aatattccactatattaaaaaatattacaatat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  28606968 aatattccactatattaaagaatattacaatat 28607000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 28611730 - 28611762
Alignment:
Q  1 aatattccactatattaaaaaatattacaatat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  28611730 aatattccactatattaaagaatattacaatat 28611762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 48826859 - 48826891
Alignment:
Q  1 aatattccactatattaaaaaatattacaatat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  48826859 aatattccactatattaaagaatattacaatat 48826891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 48 - 232
Target Start/End: Complemental strand, 12930860 - 12930672
Alignment:
Q  48 gaatattacaatattctctccactctctcttacaca--agagatacaatatagtgtgtttcataaaacccactcctatttaaatgctattattttatagc 145  Q
    |||||||||||||||||||||||||||||  |||||  |||||||||||||||||| |  | | | ||| |||  ||||  |||||||||||||||||||    
T  12930860 gaatattacaatattctctccactctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttttattctaatgctattattttatagc 12930761  T
Q  146 acttaaaagttatatagatgatgcccacaaagtgtatttttcccacactc-ct-gatttacgcaacactctatttttcctctcacacac 232  Q
    || || |||||||| ||||||| |||||   ||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||    
T  12930760 acctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcacacac 12930672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 48 - 232
Target Start/End: Complemental strand, 12935606 - 12935418
Alignment:
Q  48 gaatattacaatattctctccactctctcttacaca--agagatacaatatagtgtgtttcataaaacccactcctatttaaatgctattattttatagc 145  Q
    |||||||||||||||||||||||||||||  |||||  |||||||||||||||||| |  | | | ||| |||  || |  |||||||||||||||||||    
T  12935606 gaatattacaatattctctccactctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttttactctaatgctattattttatagc 12935507  T
Q  146 acttaaaagttatatagatgatgcccacaaagtgtatttttcccacactc-ct-gatttacgcaacactctatttttcctctcacacac 232  Q
    || || |||||||| ||||||| |||||   ||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||    
T  12935506 acctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcacacac 12935418  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 12930879 - 12930847
Alignment:
Q  1 aatattccactatattaaaaaatattacaatat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  12930879 aatattccactatattaaagaatattacaatat 12930847  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 12935625 - 12935593
Alignment:
Q  1 aatattccactatattaaaaaatattacaatat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  12935625 aatattccactatattaaagaatattacaatat 12935593  T

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Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 48 - 232
Target Start/End: Complemental strand, 34907323 - 34907135
Alignment:
Q  48 gaatattacaatattctctccactctctcttacaca--agagatacaatatagtgtgtttcataaaacccactcctatttaaatgctattattttatagc 145  Q
    |||||||||||||||||||||||||||||  |||||  |||||||||||||||||| |  | | | ||| |||  ||||  |||||||||||||||||||    
T  34907323 gaatattacaatattctctccactctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttttattctaatgctattattttatagc 34907224  T
Q  146 acttaaaagttatatagatgatgcccacaaagtgtatttttcccacactc-ct-gatttacgcaacactctatttttcctctcacacac 232  Q
    || || |||||||| ||||||| |||||   ||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||    
T  34907223 acctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaacactctatttttcctctcacacac 34907135  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 34907342 - 34907310
Alignment:
Q  1 aatattccactatattaaaaaatattacaatat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  34907342 aatattccactatattaaagaatattacaatat 34907310  T

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Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 48 - 232
Target Start/End: Original strand, 42911170 - 42911358
Alignment:
Q  48 gaatattacaatattctctccactctctcttacaca--agagatacaatatagtgtgtttcataaaacccactcctatttaaatgctattattttatagc 145  Q
    |||||||||||||||||||||||||||||  |||||  | |||||||||||||||| |  | | | ||| ||| |||||  |||||||||||||||||||    
T  42911170 gaatattacaatattctctccactctctcacacacacaaaagatacaatatagtgtttcccttgagacctacttctattctaatgctattattttatagc 42911269  T
Q  146 acttaaaagttatatagatgatgcccacaaagtgtatttttcccacactc-ct-gatttacgcaacactctatttttcctctcacacac 232  Q
    ||  | |||||||| ||||||| |||||  ||||||||||| |||||||| || ||||||| ||||||||||||||| |||||||||||    
T  42911270 accaagaagttatagagatgatacccacccagtgtattttttccacactctctggatttactcaacactctattttttctctcacacac 42911358  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 48 - 232
Target Start/End: Original strand, 29107056 - 29107242
Alignment:
Q  48 gaatattacaatattctctccactctct--cttacacaagagatacaatatagtgtgtttcataaaacccactcctatttaaatgctattattttatagc 145  Q
    ||||||||||||||||||||||||||||  |  ||||||||||||||| ||||||| |  | | | ||| ||| |||||  |||||||||||||| ||||    
T  29107056 gaatattacaatattctctccactctcttacacacacaagagatacaa-atagtgtttcccgtgagacctacttctattctaatgctattattttttagc 29107154  T
Q  146 acttaaaagttatatagatgat-gcccacaaagtgtatttttcccacactc-ct-gatttacgcaacactctatttttcctctcacacac 232  Q
    || || |||||||| |||||||  |||||  | |||||||||||||||||| || ||||||| |||||  |||||||| |||||||||||    
T  29107155 acctagaagttataaagatgataccccacccaatgtatttttcccacactctctggatttactcaaca--ctattttttctctcacacac 29107242  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 29107037 - 29107069
Alignment:
Q  1 aatattccactatattaaaaaatattacaatat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  29107037 aatattccactatattaaagaatattacaatat 29107069  T

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Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 48 - 232
Target Start/End: Complemental strand, 8539369 - 8539179
Alignment:
Q  48 gaatattacaatattctctccactctct--cttacacaagagatacaatatagt-gtgtttca-taaaacccactcctatttaaatgctattattttata 143  Q
    ||||||||||||||| ||||||||||||  |  ||||||||||||||||||  | |||||||  | | |||||||||||||  | ||||||||||||| |    
T  8539369 gaatattacaatattatctccactctcttacacacacaagagatacaatattatagtgtttccgtgagacccactcctattcgattgctattattttaca 8539270  T
Q  144 gcacttaaaagttatatagatgatgcccacaaagtgtatttttcccacactc-ctg-atttacgcaacactctatttttcctctcacacac 232  Q
    |||| ||||||||||| ||||||| ||||     |||||||||||||||||| ||| ||||||  |||||| |||||||||||||||||||    
T  8539269 gcacctaaaagttatagagatgatacccatccgatgtatttttcccacactctctgaatttactgaacactatatttttcctctcacacac 8539179  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 357
Target Start/End: Complemental strand, 8539100 - 8539050
Alignment:
Q  307 aaatcagccgtaagagttggaaatatttcacaccttttgcaccaaaagtca 357  Q
    |||| |||| ||||||||||||||| ||||||||| || ||||||||||||    
T  8539100 aaataagccataagagttggaaatagttcacacctcttacaccaaaagtca 8539050  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 85 - 232
Target Start/End: Complemental strand, 51302306 - 51302157
Alignment:
Q  85 gagatacaatatagtgtgtttcataaaacccactcctatttaaatgctattattttatagcacttaaaagttatatagatgatgcccacaaagtgtattt 184  Q
    ||||||||||||||||| |  | | | |||||||||||||  ||||| ||| ||||||||||| || |||||||| ||||||| |||||   ||||||||    
T  51302306 gagatacaatatagtgtttcccgtgagacccactcctattcgaatgcaattgttttatagcacctagaagttatagagatgattcccacccggtgtattt 51302207  T
Q  185 ttcccacactc-ct-gatttacgcaacactctatttttcctctcacacac 232  Q
    |  |||||||| || ||||||| ||| ||||||||||||||| |||||||    
T  51302206 tatccacactctctggatttactcaatactctatttttcctcacacacac 51302157  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 2100695 - 2100771
Alignment:
Q  16 taaaaaatattacaatatatctaccnnnnnnngaatattacaatattctctccactctct--cttacacaagagatac 91  Q
    |||| ||||||||||||||||||||       ||||||||||||||||||||||||||||  | ||||||||||||||    
T  2100695 taaagaatattacaatatatctaccaaaaaa-gaatattacaatattctctccactctcttacatacacaagagatac 2100771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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