View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6569_low_11 (Length: 365)
Name: NF6569_low_11
Description: NF6569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6569_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 14 - 346
Target Start/End: Original strand, 11179249 - 11179582
Alignment:
| Q |
14 |
attctaaacatacgcttggaaaatatcgaagaggttcaatattttctgcatacatatatgatgtgtgtatgtggtggatcacgataattaatctctgttt |
113 |
Q |
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| T |
11179249 |
attctaaacatacgcttggaaaatatcgaagaggttcaatattttctgcatacatatatgatgtgtgtatgtggtggatcacgataattaatctctgctt |
11179348 |
T |
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| Q |
114 |
gtatgctctttctagttatatactatgtttttgttttcttcttcaagttgattagggaccgtagaagctccctaataataattgtgtc-aaagtttttta |
212 |
Q |
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| T |
11179349 |
gtatgctctttctagttctatactatgtttttgttttgttcttcaagttgattggggaccgtagaagctccctaataatatttgtgtcaaaagtttttta |
11179448 |
T |
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| Q |
213 |
atgtgttatgtcataatgttattttctaaaatacttatacaagtatttatatgttaaatatgattgaatgtctgcatgaaattcttttatattgtcaaga |
312 |
Q |
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| T |
11179449 |
atgtgttatgtcataatgttattttctaaaatacttattcaagtatttatatgttaaatatgattgaatgtctgcatgaaattcttttatattgtcaaga |
11179548 |
T |
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| Q |
313 |
atggagcgagaaacttgtttaaaaaagaaatagc |
346 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
11179549 |
atggagcgagaaacttgtttaaaaaagaaatagc |
11179582 |
T |
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