View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6569_low_12 (Length: 345)
Name: NF6569_low_12
Description: NF6569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6569_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 31 - 327
Target Start/End: Original strand, 32600560 - 32600852
Alignment:
| Q |
31 |
caaattaatgacatattaattactttgtctcaacaataggtatataaaaattatttcatgcaccttagctaatgcccagatgctgaaatgggcacgatat |
130 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32600560 |
caaattaatgacatatatattactttgtctcaacaataggtatataaaaattatttcatgcaccttagctaatgcccagatgctgaaatgggaacgatat |
32600659 |
T |
|
| Q |
131 |
tcttctgttgtcattcctccatttccaacttcgagcatatcaggatctaattaatatcaaaacattaatggcacatatgagaaattaatattggagtttg |
230 |
Q |
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|| ||||||||||| ||||||||||||||||| |||||||||||||| ||||||| ||||||||||| |||||| ||| |||||||||||||||||| |
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| T |
32600660 |
tcctctgttgtcatgcctccatttccaacttcaagcatatcaggatc----taatatccaaacattaatgacacatacgaggaattaatattggagtttg |
32600755 |
T |
|
| Q |
231 |
atatacttgtaatgatcttaagtttaacatgcataacattactagtgaggttagttaattaccattccatcctccaggtccagcataagatgcccat |
327 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32600756 |
atgtacttgtaatgatcttaagtttaacatgcataacattactagtgaggttaattaattaccattccatcctccaggtccagcataagatgcccat |
32600852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 31 - 327
Target Start/End: Original strand, 32590112 - 32590404
Alignment:
| Q |
31 |
caaattaatgacatattaattactttgtctcaacaataggtatataaaaattatttcatgcaccttagctaatgcccagatgctgaaatgggcacgatat |
130 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32590112 |
caaattaatgacatatatattactttgtctcaacaataggtatataaaaattatttcatgcaccttagctaatgcccagatgctgaaatgggaacgatat |
32590211 |
T |
|
| Q |
131 |
tcttctgttgtcattcctccatttccaacttcgagcatatcaggatctaattaatatcaaaacattaatggcacatatgagaaattaatattggagtttg |
230 |
Q |
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|| ||||||||||| ||||||||||||||||| |||||||||||||| ||||||| ||||||||||| |||||| ||| |||||||||||||||||| |
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| T |
32590212 |
tcctctgttgtcatgcctccatttccaacttcaagcatatcaggatc----taatatccaaacattaatgacacatacgaggaattaatattggagtttg |
32590307 |
T |
|
| Q |
231 |
atatacttgtaatgatcttaagtttaacatgcataacattactagtgaggttagttaattaccattccatcctccaggtccagcataagatgcccat |
327 |
Q |
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|| |||||||||||||||||| ||||||| ||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32590308 |
atgtacttgtaatgatcttaaacttaacattcataaaattattagtgaggttaattaattaccattccatcctccaggtccagcataagatgcccat |
32590404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 91 - 178
Target Start/End: Complemental strand, 24883774 - 24883687
Alignment:
| Q |
91 |
caccttagctaatgcccagatgctgaaatgggcacgatattcttctgttgtcattcctccatttccaacttcgagcatatcaggatct |
178 |
Q |
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||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||| |
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| T |
24883774 |
caccttaactaatgcccatatgctgaaatgggcacgatattcttctgttgtcatacctccatttccaacttcaagcatgtcaggatct |
24883687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 327
Target Start/End: Complemental strand, 24883595 - 24883557
Alignment:
| Q |
289 |
ttaccattccatcctccaggtccagcataagatgcccat |
327 |
Q |
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| T |
24883595 |
ttaccattccatcctccaggtccagcgtaagaagcccat |
24883557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 56 - 327
Target Start/End: Original strand, 34577897 - 34578164
Alignment:
| Q |
56 |
tgtctcaacaataggtatataaaaattatttcatgcaccttagctaatgcccagatgctgaaatgggcacgatattcttctgttgtcattcctccatttc |
155 |
Q |
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||||||||||||| ||||||||||| | ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||||| |
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| T |
34577897 |
tgtctcaacaatatgtatataaaaagtgtttcatgtaccttagctaatgcccaaatgctgaaatgggcacgatattcctctgtggtcatgcctccatttc |
34577996 |
T |
|
| Q |
156 |
caacttcgagcatatcaggatctaattaatatcaaaacattaatggcacatatgagaaattaatattggagtttgatatacttgtaatgatcttaagttt |
255 |
Q |
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||||||| |||||||||||||||||| ||| ||||||||||| |||||| ||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34577997 |
caacttcaagcatatcaggatctaat----atccaaacattaatgacacatacgaggaattaatattggagtttgatgtacttgtaatgatcttaagttt |
34578092 |
T |
|
| Q |
256 |
aacatgcataacattactagtgaggttagttaattaccattccatcctccaggtccagcataagatgcccat |
327 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34578093 |
aacatgcataacattactagtgaggttaattaattaccattccatcctccaggtccagcataagatgcccat |
34578164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 181
Target Start/End: Original strand, 34593767 - 34593856
Alignment:
| Q |
92 |
accttagctaatgcccagatgctgaaatgggcacgatattcttctgttgtcattcctccatttccaacttcgagcatatcaggatctaat |
181 |
Q |
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||||||||||| ||||| ||||||||||| | ||||||||||||||| ||||| |||||||| ||||| || ||||| |||||||||||| |
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| T |
34593767 |
accttagctaaagcccatatgctgaaatgtgaacgatattcttctgtagtcatgcctccattcccaacctcaagcatgtcaggatctaat |
34593856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 327
Target Start/End: Original strand, 34593907 - 34593954
Alignment:
| Q |
280 |
gttagttaattaccattccatcctccaggtccagcataagatgcccat |
327 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34593907 |
gttaattaattaccattccatcctccaggtccagcatacgatgcccat |
34593954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 27532418 - 27532378
Alignment:
| Q |
138 |
ttgtcattcctccatttccaacttcgagcatatcaggatct |
178 |
Q |
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||||||| |||||||||||||| || ||||||||||||||| |
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| T |
27532418 |
ttgtcatccctccatttccaacctcaagcatatcaggatct |
27532378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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