View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6569_low_14 (Length: 323)
Name: NF6569_low_14
Description: NF6569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6569_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 2943607 - 2943319
Alignment:
| Q |
19 |
atatcctctcaaggtgtatctttttgtctgaaagacaattaataataaaattccgacaaaggccaatttaaggcgtagagaagttcttccaactaattat |
118 |
Q |
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| T |
2943607 |
atatcctctcaaggtgtctctttttgtctgaaagacaattaataatagaattccgacaaaggccaatttaaggcgtagagaagttcttccaactaattat |
2943508 |
T |
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| Q |
119 |
gttatgtgcctatgaggttgcggtaaagattaatagtgcgacttctttgatagtatttggtatctccttcatcgttgattgggtatcttaacagttgtta |
218 |
Q |
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| T |
2943507 |
gttatgtgcctatgaggttgcggtaaagattaatagtgcgacttctttggtagtatttggtatctccttcattgttgattgggtatcttaacagttgtta |
2943408 |
T |
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| Q |
219 |
cttcggatgttaggttcacgtgcaacagttttttgacgcgcatgcattcaaaaagaacattcgcgcttgctttcaagttgtttggttgg |
307 |
Q |
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| T |
2943407 |
cttcggatgttatgttcacgtgcaacagttttttgacgcgcatgcattcaaaaagaacattcacgcttgctttcaagttgtttggttgg |
2943319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 22 - 307
Target Start/End: Original strand, 36397686 - 36397972
Alignment:
| Q |
22 |
tcctctcaaggtgtatctttttgtctgaaagacaattaataataaaattccgacaaaggccaatttaaggcgtagagaagttcttccaactaattatgtt |
121 |
Q |
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| T |
36397686 |
tcctctcaaggtgtctctttttggctgaaaaacaattaataatagaactccgacaa-ggccaatttaaggcgtagagaagtccttccagctaattatgtt |
36397784 |
T |
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| Q |
122 |
atgtgcctatgaggttgcggtaaagattaatagtgcgacttctttgatagtatttggtatctccttcatcgttgattgggtatcttaacagttgttactt |
221 |
Q |
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| T |
36397785 |
atgtgctcatgaggttgcagcaaagattaatagtgtgacttctttggtagtatttgatatcttgttcatcgttgattgggcatcttaacagttgttactt |
36397884 |
T |
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| Q |
222 |
cggatgttaggt-tcacgtgcaacagttttttgacgcgcatgcattcaaaaagaacattcgcgcttgc-tttcaagttgtttggttgg |
307 |
Q |
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| T |
36397885 |
cagatattaggtgtcacgcgcaacaattttttgatgtgcatgcattcaaaaagaacatccgtacttgctttttaagttgtttggttgg |
36397972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 241 - 307
Target Start/End: Original strand, 7410848 - 7410914
Alignment:
| Q |
241 |
caacagttttttgacgcgcatgcattcaaaaagaacattcgcgcttgctttcaagttgtttggttgg |
307 |
Q |
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| T |
7410848 |
caacagttttttgtcgcgcatgctttcaaaaagaacatttgagcttgctttcaagttatttggttgg |
7410914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 158 - 310
Target Start/End: Original strand, 34869769 - 34869920
Alignment:
| Q |
158 |
gacttctttgatagtatttggtatctccttcatcgttgattgggtatcttaacagttgttacttcggatgttaggt-tcacgtgcaacagttttttgacg |
256 |
Q |
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| T |
34869769 |
gacttctttggtagtgtttgatatcttgttcatcgatggttggacatctcaacgattgttacttcggatattgggtgtcacacgaaacacttttttg--g |
34869866 |
T |
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| Q |
257 |
cgcatgcattcaaaaagaacattcgcgcttgctttcaagttgtttggttggtct |
310 |
Q |
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| T |
34869867 |
cgcatgctttcagaaagaacattcgcgcctgctttcaagttatttggttggtct |
34869920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 240 - 306
Target Start/End: Original strand, 1762719 - 1762785
Alignment:
| Q |
240 |
gcaacagttttttgacgcgcatgcattcaaaaagaacattcgcgcttgctttcaagttgtttggttg |
306 |
Q |
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| T |
1762719 |
gcaacagctttttggcgtgcatgcattcaaaaagaacatttgcgcttgctttgaagttgtttggttg |
1762785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 312
Target Start/End: Original strand, 1386491 - 1386538
Alignment:
| Q |
265 |
ttcaaaaagaacattcgcgcttgctttcaagttgtttggttggtctgt |
312 |
Q |
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| T |
1386491 |
ttcaaaaagaacattcacgcttgctttcaagttgtttggttggcctgt |
1386538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 44072442 - 44072486
Alignment:
| Q |
268 |
aaaaagaacattcgcgcttgctttcaagttgtttggttggtctgt |
312 |
Q |
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| T |
44072442 |
aaaaagaacatttgcgcttgctttcaggttatttggttggtctgt |
44072486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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