View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6569_low_18 (Length: 249)
Name: NF6569_low_18
Description: NF6569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6569_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 32255098 - 32254869
Alignment:
| Q |
1 |
ttgaaagctacatctatgcatttaagtttgagcaacatggtttgtgcttaatcaagactgtaaatgaactaattaaagtgaaaaagaagtactgatatgt |
100 |
Q |
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| T |
32255098 |
ttgaaagctacatctatgcatttaagtttgagcaacatggtttgtgcttaatcaagactgtaaatgaactaattaaagtgaaaaagaagtactgatatgt |
32254999 |
T |
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| Q |
101 |
aaagaatggacgcagagtgcatggggaccattccatattgccatgtctgatttatttaaactgcagtcaggataccaacaaagtggatatatataataat |
200 |
Q |
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| T |
32254998 |
aaagaatggacgcagagtgcatggggaccattccatattgccatgtctgatttatttaaactgcattcaggataccaacaaagtggatatatataataat |
32254899 |
T |
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| Q |
201 |
gtgatgtgtaggaaattaagaattcatagg |
230 |
Q |
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| T |
32254898 |
gtgatgtgtaggaaattaagaattcatagg |
32254869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 32244606 - 32244484
Alignment:
| Q |
9 |
tacatctatgcatttaagtttgagcaacatggtttgtgcttaatcaagactgtaaatgaactaattaaagtgaaaaagaagtactgat------atgtaa |
102 |
Q |
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| T |
32244606 |
tacatctatatatttgagtctgagcaacactgttactgcttaatgaaaactgtaaatgaattaagtaaagtgaaaaagaagtaatgatatcaacatgtaa |
32244507 |
T |
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| Q |
103 |
agaatggacgcagagtgcatggg |
125 |
Q |
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| T |
32244506 |
agaatcgacgcagaatgcatggg |
32244484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 32250091 - 32250048
Alignment:
| Q |
187 |
atatatataataatgtgatgtgtaggaaattaagaattcatagg |
230 |
Q |
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| T |
32250091 |
atatctatcataatgtgatgtgtaggaaattaagaattcatagg |
32250048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 230
Target Start/End: Complemental strand, 32244372 - 32244339
Alignment:
| Q |
197 |
taatgtgatgtgtaggaaattaagaattcatagg |
230 |
Q |
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| T |
32244372 |
taatgtgatgtgtaggaaattaagaattcatagg |
32244339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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