View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6569_low_23 (Length: 229)
Name: NF6569_low_23
Description: NF6569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6569_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 26654500 - 26654278
Alignment:
| Q |
1 |
caagctttgctctttcaataaaatcacaacttcatcatctctttcttttctttcttcaacaatttctttagctccttcagccatatcagaatgctgcaca |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26654500 |
caagctatgctctttcaataaaatcacaacttcatcatctctttcttttctttcttcaacaatttctttagctccttcagccatatcagaatgttgcaca |
26654401 |
T |
|
| Q |
101 |
acagttgctttgtttttgaaagcatagctatgactttcaccttgagtctcagataaaaaggctctgttactagacttccgtgcttcttttcttccatttg |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||| |
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| T |
26654400 |
acagttactttgtttttgaaagcatagctatgactttcaccttgagtctcagataaaaaggctctgtcattagacttccatgcttcttttcttccatttg |
26654301 |
T |
|
| Q |
201 |
catcttcaaaatcatcctctaag |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
26654300 |
catcttcaaaatcatcctctaag |
26654278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 134 - 219
Target Start/End: Complemental strand, 26648340 - 26648255
Alignment:
| Q |
134 |
ctttcaccttgagtctcagataaaaaggctctgttactagacttccgtgcttcttttcttccatttgcatcttcaaaatcatcctc |
219 |
Q |
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|||||||||||||||||||||||| || |||||| | ||||| ||| ||||| ||| || ||||||||||||||| |||||||||| |
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| T |
26648340 |
ctttcaccttgagtctcagataaacagactctgtcattagacatccttgcttgtttgctcccatttgcatcttcagaatcatcctc |
26648255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 213
Target Start/End: Original strand, 20007166 - 20007244
Alignment:
| Q |
135 |
tttcaccttgagtctcagataaaaaggctctgttactagacttccgtgcttcttttcttccatttgcatcttcaaaatc |
213 |
Q |
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| T |
20007166 |
tttcaccttgagtctcagataaacagagactgtcactagacattcttgcttctttgctcccatttgcatcttcataatc |
20007244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 212
Target Start/End: Original strand, 20015094 - 20015172
Alignment:
| Q |
134 |
ctttcaccttgagtctcagataaaaaggctctgttactagacttccgtgcttcttttcttccatttgcatcttcaaaat |
212 |
Q |
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|||||| ||||||||||||||||| || |||||| ||||| | ||| | |||| || || ||||||||||||||||||| |
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| T |
20015094 |
ctttcagcttgagtctcagataaacagactctgtcactagtcatccttacttccttgctcccatttgcatcttcaaaat |
20015172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 206
Target Start/End: Original strand, 20035423 - 20035508
Alignment:
| Q |
121 |
agcatagctatgactttcaccttgagtctcagataaaaaggctctgttactagacttccgtgcttcttttcttccatttgcatctt |
206 |
Q |
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|||||||||| | ||||||||||||||||||||||| | || ||| |||||| ||| |||||||||| | |||| |||||||| |
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| T |
20035423 |
agcatagctacaaatttcaccttgagtctcagataaacaaactttgtcactagaaatccttgcttcttttataccatctgcatctt |
20035508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 219
Target Start/End: Complemental strand, 9816259 - 9816174
Alignment:
| Q |
134 |
ctttcaccttgagtctcagataaaaaggctctgttactagacttccgtgcttcttttcttccatttgcatcttcaaaatcatcctc |
219 |
Q |
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|||||||||||||||||||||||| || |||||| || | | ||| ||||||||| |||| ||||||||||||| |||| ||||| |
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| T |
9816259 |
ctttcaccttgagtctcagataaacagactctgtcaccataaatccttgcttctttgcttcgatttgcatcttcagaatcttcctc |
9816174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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