View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6569_low_3 (Length: 506)

Name: NF6569_low_3
Description: NF6569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6569_low_3
NF6569_low_3
[»] chr1 (13 HSPs)
chr1 (13-488)||(17915975-17916452)
chr1 (250-361)||(31847331-31847442)
chr1 (241-282)||(9450235-9450276)
chr1 (221-276)||(1831258-1831313)
chr1 (239-289)||(32191145-32191195)
chr1 (239-289)||(34123170-34123220)
chr1 (239-282)||(1245940-1245982)
chr1 (222-273)||(5760058-5760109)
chr1 (221-272)||(17492734-17492785)
chr1 (299-354)||(32191231-32191286)
chr1 (239-276)||(12082188-12082225)
chr1 (220-289)||(25484964-25485033)
chr1 (221-273)||(34062667-34062719)
[»] chr6 (3 HSPs)
chr6 (166-356)||(32820752-32820942)
chr6 (260-356)||(32820727-32820823)
chr6 (239-279)||(22682596-22682636)
[»] chr7 (16 HSPs)
chr7 (221-356)||(38482303-38482436)
chr7 (222-328)||(48078598-48078704)
chr7 (221-289)||(35851961-35852029)
chr7 (220-279)||(16780770-16780829)
chr7 (239-289)||(101287-101337)
chr7 (239-281)||(25690754-25690796)
chr7 (189-277)||(5721670-5721758)
chr7 (206-276)||(5815123-5815193)
chr7 (221-282)||(11754690-11754751)
chr7 (316-361)||(28557370-28557415)
chr7 (221-281)||(31726647-31726707)
chr7 (240-274)||(11329526-11329560)
chr7 (244-282)||(23018502-23018540)
chr7 (221-279)||(41195711-41195769)
chr7 (238-279)||(16872743-16872784)
chr7 (239-275)||(21346403-21346439)
[»] chr8 (11 HSPs)
chr8 (205-289)||(34273127-34273211)
chr8 (220-289)||(38924417-38924486)
chr8 (245-289)||(32729458-32729502)
chr8 (236-283)||(33435403-33435450)
chr8 (245-290)||(36110624-36110669)
chr8 (222-282)||(29204624-29204684)
chr8 (221-277)||(9030608-9030664)
chr8 (239-276)||(8238788-8238825)
chr8 (232-289)||(10340250-10340307)
chr8 (239-275)||(30370054-30370090)
chr8 (260-336)||(30370092-30370168)
[»] chr3 (8 HSPs)
chr3 (191-282)||(12767331-12767422)
chr3 (239-280)||(25258075-25258116)
chr3 (260-356)||(24498265-24498361)
chr3 (205-277)||(37058991-37059063)
chr3 (239-277)||(54905142-54905180)
chr3 (246-281)||(52205041-52205076)
chr3 (243-289)||(581051-581097)
chr3 (239-273)||(40413445-40413479)
[»] chr2 (9 HSPs)
chr2 (206-361)||(28314589-28314744)
chr2 (221-282)||(15538954-15539015)
chr2 (221-281)||(21488866-21488926)
chr2 (202-273)||(37172605-37172676)
chr2 (239-289)||(15404953-15405003)
chr2 (234-282)||(10633407-10633455)
chr2 (239-279)||(11279979-11280019)
chr2 (239-278)||(4422821-4422860)
chr2 (244-283)||(42866722-42866761)
[»] scaffold0471 (1 HSPs)
scaffold0471 (245-290)||(492-537)
[»] chr5 (7 HSPs)
chr5 (300-361)||(896000-896061)
chr5 (232-277)||(33270031-33270076)
chr5 (221-271)||(7963179-7963229)
chr5 (239-356)||(896104-896221)
chr5 (220-289)||(35631480-35631549)
chr5 (245-289)||(23311802-23311846)
chr5 (221-277)||(36289619-36289675)
[»] chr4 (7 HSPs)
chr4 (222-282)||(2604029-2604089)
chr4 (239-281)||(40423319-40423361)
chr4 (221-276)||(25844268-25844323)
chr4 (244-282)||(11548161-11548199)
chr4 (299-361)||(40163478-40163540)
chr4 (239-276)||(79525-79562)
chr4 (192-273)||(5961769-5961850)
[»] scaffold0526 (1 HSPs)
scaffold0526 (236-278)||(5810-5852)


Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 13 - 488
Target Start/End: Complemental strand, 17916452 - 17915975
Alignment:
Q  13 aaaatagctactcgaataactatactaactaataactaacataaccaactattgggttgcaactttcccctttttctgcgtaaaccccggtagttttatc 112  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17916452 aaaataactactcgaataactatactaactagtaactaacataaccaactattgggttgcaactttcccctttttctgcgtaaaccccggtagttttatc 17916353  T
Q  113 tattattatggaaaaattacnnnnnnnnccttaaaattattcatttccttgattcagttagaattaattctcgttcgacatttttcaattagagttaact 212  Q
    ||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17916352 tattattatgggaaaattactttttttcccttaaaattattcatttccttgattcagttagaattaactctcgttcgacatttttcaattagagttaact 17916253  T
Q  213 ctcattagcacttttaaattcgatttaatcactttttaagtcggttcaaccgatcttaaaagtgtcagcgagagttagctctaatcgaaaaatgtcgaac 312  Q
    | | |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17916252 cccgttagcacttttaaattcggtttaatcactttttaagtcggttcaatcgatcttaaaagtgtcagcgagagttaactctaatcgaaaaatgtcgaac 17916153  T
Q  313 ggaagttaactctaactgagttaaaagaatgagtaattttaaaaaggagtatgagagttttctcatcatgggctcttcttgttgcctaacatagcatttg 412  Q
    |||| || ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17916152 ggaaatttactctaattgagttaaaagaatgagtaattttgaaaaggagtatgagagttttctcatcatgggctcttcttgttgcctaacatagcatttg 17916053  T
Q  413 ctcttcttgaaagcaccctgctccttttctacttcaataatac--cccctccaccaatagtaattatgaggtatgtta 488  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  17916052 ctcttcttgaaagcaccctgctccttttctacttcaataataccccccctccaccaatagtaattatgaggtatgtta 17915975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 361
Target Start/End: Complemental strand, 31847442 - 31847331
Alignment:
Q  250 aagtcggttcaaccgatcttaaaagtgtcagcgagagttagctctaatcgaaaaatgtcgaacggaagttaactctaactgagttaaaagaatgagtaat 349  Q
    |||||||||| ||||||||||||||||||||||||||||| |||     |||||||||||| || ||||||||| |  ||| || ||| ||||||| |||    
T  31847442 aagtcggttcgaccgatcttaaaagtgtcagcgagagttaactcacgctgaaaaatgtcgagcgtaagttaactattgctgggtcaaaggaatgagcaat 31847343  T
Q  350 tttaaaaaggag 361  Q
    ||| ||| ||||    
T  31847342 tttgaaagggag 31847331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 9450235 - 9450276
Alignment:
Q  241 tcactttttaagtcggttcaaccgatcttaaaagtgtcagcg 282  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  9450235 tcactttttaagtcggttcaaccgatcttaaaagtgccagcg 9450276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 221 - 276
Target Start/End: Complemental strand, 1831313 - 1831258
Alignment:
Q  221 cacttttaaattcgatttaatcactttttaagtcggttcaaccgatcttaaaagtg 276  Q
    |||||||||  ||| ||||||| ||||||||||||||||||| |||||||||||||    
T  1831313 cacttttaagatcggtttaatcgctttttaagtcggttcaactgatcttaaaagtg 1831258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 32191195 - 32191145
Alignment:
Q  239 aatcactttttaagtcggttcaaccgatcttaaaagtgtcagcgagagtta 289  Q
    ||||| ||||||||| |||||||||||||||||||||| ||||| ||||||    
T  32191195 aatcattttttaagttggttcaaccgatcttaaaagtgccagcgtgagtta 32191145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 34123220 - 34123170
Alignment:
Q  239 aatcactttttaagtcggttcaaccgatcttaaaagtgtcagcgagagtta 289  Q
    ||||||||||||||  |||||||||||| ||||||||||||||| ||||||    
T  34123220 aatcactttttaagctggttcaaccgattttaaaagtgtcagcgtgagtta 34123170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 282
Target Start/End: Complemental strand, 1245982 - 1245940
Alignment:
Q  239 aatcactttttaagtcggttcaaccgatcttaaaagtgtcagcg 282  Q
    ||||||||||||| || |||||||||||||||||||||||||||    
T  1245982 aatcactttttaa-tcagttcaaccgatcttaaaagtgtcagcg 1245940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 273
Target Start/End: Original strand, 5760058 - 5760109
Alignment:
Q  222 acttttaaattcgatttaatcactttttaagtcggttcaaccgatcttaaaa 273  Q
    ||||||||  ||| || ||||||||||||||||| |||||||||||||||||    
T  5760058 acttttaagatcgcttcaatcactttttaagtcgcttcaaccgatcttaaaa 5760109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 17492785 - 17492734
Alignment:
Q  221 cacttttaaattcgatttaatcactttttaagtcggttcaaccgatcttaaa 272  Q
    |||||||||  |||||| ||||||||||||||||| |||||| |||||||||    
T  17492785 cacttttaatatcgattcaatcactttttaagtcgattcaactgatcttaaa 17492734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 354
Target Start/End: Original strand, 32191231 - 32191286
Alignment:
Q  299 gaaaaatgtcgaacggaagttaactctaactgagttaaaagaatgagtaattttaa 354  Q
    |||||||||||||||  |||||||||   ||||||||| |||||||||||||||||    
T  32191231 gaaaaatgtcgaacgagagttaactcatgctgagttaagagaatgagtaattttaa 32191286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 12082188 - 12082225
Alignment:
Q  239 aatcactttttaagtcggttcaaccgatcttaaaagtg 276  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  12082188 aatcactttgtaagtcgggtcaaccgatcttaaaagtg 12082225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 25484964 - 25485033
Alignment:
Q  220 gcacttttaaattcgatttaatcactttttaagtcggttcaaccgatcttaaaagtgtcagcgagagtta 289  Q
    ||||||||||  || ||| |||||||||||||| |  ||||| |||||||||||||| ||||| ||||||    
T  25484964 gcacttttaagatcaattcaatcactttttaagccaattcaaacgatcttaaaagtggcagcgtgagtta 25485033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 273
Target Start/End: Original strand, 34062667 - 34062719
Alignment:
Q  221 cacttttaaattcgatttaatcactttttaagtcggttcaaccgatcttaaaa 273  Q
    |||||||||| ||| || ||||||||||||||||| |||||| ||| ||||||    
T  34062667 cacttttaaaatcggttcaatcactttttaagtcgtttcaactgattttaaaa 34062719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 9e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 166 - 356
Target Start/End: Original strand, 32820752 - 32820942
Alignment:
Q  166 tcagttagaattaattctcgttcgacatttttcaattagagttaactctcattagcacttttaaattcgatttaatcactttttaagtcggttcaaccga 265  Q
    |||||||  ||||| | ||| |||| |||||||| ||||||||||||| || |  |||| ||||  ||| || |  |||||||||||| |||||||| ||    
T  32820752 tcagttactattaactttcgctcgatatttttcagttagagttaactcccactgacactattaagatcggttcagacactttttaagttggttcaactga 32820851  T
Q  266 tcttaaaagtgtcagcgagagttagctctaatcgaaaaatgtcgaacggaagttaactctaactgagttaaaagaatgagtaattttaaaa 356  Q
    | ||||||||| |||| || |||| ||||||  |||||||||||| ||||||||||||||| |||||||||  ||||||  ||||||||||    
T  32820852 tgttaaaagtgacagcaagtgttaactctaactgaaaaatgtcgagcggaagttaactctagctgagttaagggaatgaacaattttaaaa 32820942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 356
Target Start/End: Complemental strand, 32820823 - 32820727
Alignment:
Q  260 aaccgatcttaaaagtgtcagcgagagttagctctaatcgaaaaatgtcgaacggaagttaactctaactgagttaaaagaatgagtaattttaaaa 356  Q
    |||||||||||| |||||||| | |||||| ||||||  ||||||| |||| || |||||||   |||||||||||| | |||||| ||||||||||    
T  32820823 aaccgatcttaatagtgtcagtgggagttaactctaactgaaaaatatcgagcgaaagttaatagtaactgagttaacaaaatgagcaattttaaaa 32820727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 22682596 - 22682636
Alignment:
Q  239 aatcactttttaagtcggttcaaccgatcttaaaagtgtca 279  Q
    ||||| ||||||||| |||||||||||||||||||||||||    
T  22682596 aatcattttttaagttggttcaaccgatcttaaaagtgtca 22682636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 221 - 356
Target Start/End: Complemental strand, 38482436 - 38482303
Alignment:
Q  221 cacttttaaattcgatttaatcactttttaagtcggttcaaccgatcttaaaagtgtcagcgagagttagctctaatcgaaaaatgtcgaacggaagtta 320  Q
    |||||||||  | ||||||||||||||||||||| ||| ||||| | |||||| ||||||||||||||| |||||   ||||||| |||||| ||| |||    
T  38482436 cacttttaagattgatttaatcactttttaagtcagttaaaccgtt-ttaaaa-tgtcagcgagagttaactctagctgaaaaatatcgaacagaaatta 38482339  T
Q  321 actctaactgagttaaaagaatgagtaattttaaaa 356  Q
    ||||||||| ||||||| ||||||  ||||||||||    
T  38482338 actctaactaagttaaaggaatgaacaattttaaaa 38482303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 222 - 328
Target Start/End: Original strand, 48078598 - 48078704
Alignment:
Q  222 acttttaaattcgatttaatcactttttaagtcggttcaaccgatcttaaaagtgtcagcgagagttagctctaatcgaaaaatgtcgaacggaagttaa 321  Q
    ||||||||  || ||| |||||||||||||||||||||||||||||||||||||| || ||||||||| ||||| | ||||||||     ||||||||||    
T  48078598 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaactctagttgaaaaatgattggcggaagttaa 48078697  T
Q  322 ctctaac 328  Q
    |||||||    
T  48078698 ctctaac 48078704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 221 - 289
Target Start/End: Complemental strand, 35852029 - 35851961
Alignment:
Q  221 cacttttaaattcgatttaatcactttttaagtcggttcaaccgatcttaaaagtgtcagcgagagtta 289  Q
    |||||||||  ||| || ||||||||| |||||||||||||||||||||||||||||||| | ||||||    
T  35852029 cacttttaagatcggttcaatcactttctaagtcggttcaaccgatcttaaaagtgtcagtgtgagtta 35851961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 279
Target Start/End: Complemental strand, 16780829 - 16780770
Alignment:
Q  220 gcacttttaaattcgatttaatcactttttaagtcggttcaaccgatcttaaaagtgtca 279  Q
    ||||||||||  ||| || ||||||||||||||||| |||||||||||||||||||||||    
T  16780829 gcacttttaagatcggttcaatcactttttaagtcgattcaaccgatcttaaaagtgtca 16780770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 101337 - 101287
Alignment:
Q  239 aatcactttttaagtcggttcaaccgatcttaaaagtgtcagcgagagtta 289  Q
    |||||||||||||||| | ||||||||||||||||||||||||| ||||||    
T  101337 aatcactttttaagtcaggtcaaccgatcttaaaagtgtcagcgtgagtta 101287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 25690754 - 25690796
Alignment:
Q  239 aatcactttttaagtcggttcaaccgatcttaaaagtgtcagc 281  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  25690754 aatcactttttaagccggttcaaccgatcttaaaagtgtcagc 25690796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 189 - 277
Target Start/End: Original strand, 5721670 - 5721758
Alignment:
Q  189 gacatttttcaattagagttaactctc-attagcacttttaaattcgatttaatcactttttaagtcggttcaaccgatcttaaaagtgt 277  Q
    ||||||||||| ||||||||||||| | || || ||||||||  |||||| ||| |||||| || |||||||||||||||||||||||||    
T  5721670 gacatttttcagttagagttaactcacgatgag-acttttaagatcgattcaattacttttcaaatcggttcaaccgatcttaaaagtgt 5721758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 276
Target Start/End: Complemental strand, 5815193 - 5815123
Alignment:
Q  206 gttaactctcattagcacttttaaattcgatttaatcactttttaagtcggttcaaccgatcttaaaagtg 276  Q
    |||||||| || |||||||||| || | | || |||||||||||||||| | |||||||||||||||||||    
T  5815193 gttaactcacactagcactttttaaattggttcaatcactttttaagtcaggtcaaccgatcttaaaagtg 5815123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 221 - 282
Target Start/End: Complemental strand, 11754751 - 11754690
Alignment:
Q  221 cacttttaaattcgatttaatcactttttaagtcggttcaaccgatcttaaaagtgtcagcg 282  Q
    |||||||||  ||| || ||||||||||||  ||||||||||| ||||||||||||||||||    
T  11754751 cacttttaagatcggttcaatcactttttatctcggttcaaccaatcttaaaagtgtcagcg 11754690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 361
Target Start/End: Original strand, 28557370 - 28557415
Alignment:
Q  316 agttaactctaactgagttaaaagaatgagtaattttaaaaaggag 361  Q
    ||||||||||  ||||||||||||||||||||||||||||| ||||    
T  28557370 agttaactcttgctgagttaaaagaatgagtaattttaaaagggag 28557415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 31726707 - 31726647
Alignment:
Q  221 cacttttaaattcgatttaatcactttttaagtcggttcaaccgatcttaaaagtgtcagc 281  Q
    ||||||||| |||| || |||||  ||||||| |||||||||||||||||||||| |||||    
T  31726707 cacttttaagttcggttcaatcatattttaagccggttcaaccgatcttaaaagtatcagc 31726647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 240 - 274
Target Start/End: Original strand, 11329526 - 11329560
Alignment:
Q  240 atcactttttaagtcggttcaaccgatcttaaaag 274  Q
    ||||||||||||||||||| |||||||||||||||    
T  11329526 atcactttttaagtcggtttaaccgatcttaaaag 11329560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 282
Target Start/End: Complemental strand, 23018540 - 23018502
Alignment:
Q  244 ctttttaagtcggttcaaccgatcttaaaagtgtcagcg 282  Q
    ||||||||||||||| ||||||||||||||||| |||||    
T  23018540 ctttttaagtcggtttaaccgatcttaaaagtgccagcg 23018502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 279
Target Start/End: Original strand, 41195711 - 41195769
Alignment:
Q  221 cacttttaaattcgatttaatcactttttaagtcggttcaaccgatcttaaaagtgtca 279  Q
    |||||||||  | |||| ||||||||||||||  |||||||| ||||||||||||||||    
T  41195711 cacttttaaggttgattcaatcactttttaagctggttcaactgatcttaaaagtgtca 41195769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 279
Target Start/End: Complemental strand, 16872784 - 16872743
Alignment:
Q  238 taatcactttttaagtcggttcaaccgatcttaaaagtgtca 279  Q
    |||| ||||||||||| |||| ||||||||||||||||||||    
T  16872784 taataactttttaagttggtttaaccgatcttaaaagtgtca 16872743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 21346403 - 21346439
Alignment:
Q  239 aatcactttttaagtcggttcaaccgatcttaaaagt 275  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  21346403 aatcactttttaagttggttcaaccgaccttaaaagt 21346439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 205 - 289
Target Start/End: Complemental strand, 34273211 - 34273127
Alignment:
Q  205 agttaactctcattagcacttttaaattcgatttaatcactttttaagtcggttcaaccgatcttaaaagtgtcagcgagagtta 289  Q
    ||||||||| || ||| ||||||||  ||| || ||||||| |||||||||||||||||||| ||||||||||||||| ||||||    
T  34273211 agttaactcacactagtacttttaagatcggttcaatcactgtttaagtcggttcaaccgattttaaaagtgtcagcgtgagtta 34273127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 38924417 - 38924486
Alignment:
Q  220 gcacttttaaattcgatttaatcactttttaagtcggttcaaccgatcttaaaagtgtcagcgagagtta 289  Q
    ||||||||||  ||| || |||||||||||||||||||||||| ||||||||||||| ||||| ||||||    
T  38924417 gcacttttaagatcggttcaatcactttttaagtcggttcaactgatcttaaaagtgacagcgtgagtta 38924486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 32729458 - 32729502
Alignment:
Q  245 tttttaagtcggttcaaccgatcttaaaagtgtcagcgagagtta 289  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  32729458 tttttaagtcggttcaaccgatcttaaaagtgtcagcgacagtta 32729502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 283
Target Start/End: Complemental strand, 33435450 - 33435403
Alignment:
Q  236 tttaatcactttttaagtcggttcaaccgatcttaaaagtgtcagcga 283  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||    
T  33435450 tttaattactttttaagtcggttcaaccgatcttaaaagtgacagcga 33435403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 36110669 - 36110624
Alignment:
Q  245 tttttaagtcggttcaaccgatcttaaaagtgtcagcgagagttag 290  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||    
T  36110669 tttttaagtcggttcaactgatcttaaaagtgtcagcgatagttag 36110624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 282
Target Start/End: Original strand, 29204624 - 29204684
Alignment:
Q  222 acttttaaattcgatttaatcactttttaagtcggttcaaccgatcttaaaagtgtcagcg 282  Q
    ||||||||| ||| || |||||||||||||||||| ||||| ||||||||||||| |||||    
T  29204624 acttttaaaatcggttcaatcactttttaagtcggatcaactgatcttaaaagtgacagcg 29204684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 277
Target Start/End: Original strand, 9030608 - 9030664
Alignment:
Q  221 cacttttaaattcgatttaatcactttttaagtcggttcaaccgatcttaaaagtgt 277  Q
    |||||||||  |||||| ||||||||||||| |||||||||  ||||||||||||||    
T  9030608 cacttttaagatcgattcaatcactttttaaatcggttcaattgatcttaaaagtgt 9030664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 8238788 - 8238825
Alignment:
Q  239 aatcactttttaagtcggttcaaccgatcttaaaagtg 276  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  8238788 aatcacttttttagtcggatcaaccgatcttaaaagtg 8238825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 10340250 - 10340307
Alignment:
Q  232 tcgatttaatcactttttaagtcggttcaaccgatcttaaaagtgtcagcgagagtta 289  Q
    |||||| ||||| ||||||||| || ||  ||||||||||||||||||||| ||||||    
T  10340250 tcgattcaatcattttttaagttgggtcggccgatcttaaaagtgtcagcgtgagtta 10340307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 30370090 - 30370054
Alignment:
Q  239 aatcactttttaagtcggttcaaccgatcttaaaagt 275  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  30370090 aatcactttttaagttggttcaaccgattttaaaagt 30370054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 336
Target Start/End: Original strand, 30370092 - 30370168
Alignment:
Q  260 aaccgatcttaaaagtgtcagcgagagttagctctaatcgaaaaatgtcgaacggaagttaactctaactgagttaa 336  Q
    |||||||| |||| ||| ||||  |||||| ||| ||  |||||||| ||| ||||||||||||||| |||||||||    
T  30370092 aaccgatcataaatgtgccagcaggagttaactccaaatgaaaaatgacgagcggaagttaactctagctgagttaa 30370168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 191 - 282
Target Start/End: Complemental strand, 12767422 - 12767331
Alignment:
Q  191 catttttcaattagagttaactctcattagcacttttaaattcgatttaatcactttttaagtcggttcaaccgatcttaaaagtgtcagcg 282  Q
    |||||||||| | |||||||||| |  || |||||||||  ||| || |||||||||||||||||| ||||||||||||| |||||||||||    
T  12767422 catttttcaacttgagttaactcacgctaacacttttaagatcgtttcaatcactttttaagtcggatcaaccgatcttagaagtgtcagcg 12767331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 25258116 - 25258075
Alignment:
Q  239 aatcactttttaagtcggttcaaccgatcttaaaagtgtcag 280  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  25258116 aatcactttttaagtcggttcaaccgatcttaaaagtgtcag 25258075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 356
Target Start/End: Original strand, 24498265 - 24498361
Alignment:
Q  260 aaccgatcttaaaagtgtcagcgagagttagctctaatcgaaaaatgtcgaacggaagttaactctaactgagttaaaagaatgagtaattttaaaa 356  Q
    ||||||||||||||||| || ||||||||| | |||   |||||||  | | | |||||||||||||  |||||||| |||||||||||||||||||    
T  24498265 aaccgatcttaaaagtgccaacgagagttaaccctagctgaaaaataccaagcagaagttaactctagttgagttaagagaatgagtaattttaaaa 24498361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 277
Target Start/End: Complemental strand, 37059063 - 37058991
Alignment:
Q  205 agttaactctcattagcacttttaaattcgatttaatcactttttaagtcggttcaaccgatcttaaaagtgt 277  Q
    ||||||||| | ||| || ||||||  |||||| ||||| ||||||||||| |||||||||||||||||||||    
T  37059063 agttaactcactttaacatttttaagatcgattcaatcattttttaagtcgattcaaccgatcttaaaagtgt 37058991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 54905142 - 54905180
Alignment:
Q  239 aatcactttttaagtcggttcaaccgatcttaaaagtgt 277  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  54905142 aatcactttttaagtcggtttaaccgatcttaaaagtgt 54905180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 281
Target Start/End: Complemental strand, 52205076 - 52205041
Alignment:
Q  246 ttttaagtcggttcaaccgatcttaaaagtgtcagc 281  Q
    ||||||||||| ||||||||||||||||||||||||    
T  52205076 ttttaagtcgggtcaaccgatcttaaaagtgtcagc 52205041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 289
Target Start/End: Complemental strand, 581097 - 581051
Alignment:
Q  243 actttttaagtcggttcaaccgatcttaaaagtgtcagcgagagtta 289  Q
    |||||||||||| ||||||||||||||||||||  ||||| ||||||    
T  581097 actttttaagtctgttcaaccgatcttaaaagtaccagcgtgagtta 581051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 273
Target Start/End: Complemental strand, 40413479 - 40413445
Alignment:
Q  239 aatcactttttaagtcggttcaaccgatcttaaaa 273  Q
    |||||||||||||||||| ||||||||||||||||    
T  40413479 aatcactttttaagtcgggtcaaccgatcttaaaa 40413445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 206 - 361
Target Start/End: Complemental strand, 28314744 - 28314589
Alignment:
Q  206 gttaactctcattagcacttttaaattcgatttaatcactttttaagtcggttcaaccgatcttaaaagtgtcagcgagagttagctctaatcgaaaaat 305  Q
    ||||| |||| || ||||||||||  ||| || ||||||||||||| | |||| ||||||||||||||||||||||  |||||| ||||| | |||||||    
T  28314744 gttaagtctcgttggcacttttaagatcggttcaatcactttttaaattggttgaaccgatcttaaaagtgtcagcaggagttaactctagttgaaaaat 28314645  T
Q  306 gtcgaacggaagttaactctaactgagttaaaagaatgagtaattttaaaaaggag 361  Q
      | | |   |||||||| ||||||||||||  |||||| ||||||| ||| ||||    
T  28314644 accaagcaacagttaactttaactgagttaatggaatgaataattttgaaagggag 28314589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 282
Target Start/End: Original strand, 15538954 - 15539015
Alignment:
Q  221 cacttttaaattcgatttaatcactttttaagtcggttcaaccgatcttaaaagtgtcagcg 282  Q
    |||||||||  ||| || ||| ||||||||||||||||||| ||||||||||||||||||||    
T  15538954 cacttttaagatcggttcaattactttttaagtcggttcaatcgatcttaaaagtgtcagcg 15539015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 21488866 - 21488926
Alignment:
Q  221 cacttttaaattcgatttaatcactttttaagtcggttcaaccgatcttaaaagtgtcagc 281  Q
    |||||||||  ||| || ||||| |||||||||| ||||||||||||||||||||||||||    
T  21488866 cacttttaagatcggttcaatcattttttaagtcagttcaaccgatcttaaaagtgtcagc 21488926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 202 - 273
Target Start/End: Complemental strand, 37172676 - 37172605
Alignment:
Q  202 tagagttaactctcattagcacttttaaattcgatttaatcactttttaagtcggttcaaccgatcttaaaa 273  Q
    |||||||||||| ||||  |||||||||  ||| || |||||||||||||||| |||||||| |||||||||    
T  37172676 tagagttaactcccattgacacttttaacatcggttcaatcactttttaagtcagttcaaccaatcttaaaa 37172605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 15404953 - 15405003
Alignment:
Q  239 aatcactttttaagtcggttcaaccgatcttaaaagtgtcagcgagagtta 289  Q
    |||||||||||||||||| ||||||||| |||||||||||| || ||||||    
T  15404953 aatcactttttaagtcgggtcaaccgattttaaaagtgtcaacgtgagtta 15405003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 10633407 - 10633455
Alignment:
Q  234 gatttaatcactttttaagtcggttcaaccgatcttaaaagtgtcagcg 282  Q
    |||| ||||| ||||||||||| ||||||||||||||||||| ||||||    
T  10633407 gattcaatcaatttttaagtcgtttcaaccgatcttaaaagtatcagcg 10633455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 11280019 - 11279979
Alignment:
Q  239 aatcactttttaagtcggttcaaccgatcttaaaagtgtca 279  Q
    |||||||||||||||||||||||||||| |||||| |||||    
T  11280019 aatcactttttaagtcggttcaaccgattttaaaattgtca 11279979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 4422860 - 4422821
Alignment:
Q  239 aatcactttttaagtcggttcaaccgatcttaaaagtgtc 278  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  4422860 aatcactttttaagtcgaatcaaccgatcttaaaagtgtc 4422821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 283
Target Start/End: Complemental strand, 42866761 - 42866722
Alignment:
Q  244 ctttttaagtcggttcaaccgatcttaaaagtgtcagcga 283  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  42866761 ctttttaagtctattcaaccgatcttaaaagtgtcagcga 42866722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 537 - 492
Alignment:
Q  245 tttttaagtcggttcaaccgatcttaaaagtgtcagcgagagttag 290  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||    
T  537 tttttaagtcggttcaactgatcttaaaagtgtcagcgatagttag 492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 300 - 361
Target Start/End: Complemental strand, 896061 - 896000
Alignment:
Q  300 aaaaatgtcgaacggaagttaactctaactgagttaaaagaatgagtaattttaaaaaggag 361  Q
    |||||||| |||||| ||||||||||   ||| |||||||||||||||||||||||||||||    
T  896061 aaaaatgttgaacgggagttaactctcgttgacttaaaagaatgagtaattttaaaaaggag 896000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 33270031 - 33270076
Alignment:
Q  232 tcgatttaatcactttttaagtcggttcaaccgatcttaaaagtgt 277  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||    
T  33270031 tcgatttaatcacattttaagtcggttcaaccaatcttaaaagtgt 33270076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 7963229 - 7963179
Alignment:
Q  221 cacttttaaattcgatttaatcactttttaagtcggttcaaccgatcttaa 271  Q
    |||||||||| |||||| |||||| |||| |||||| ||||||||||||||    
T  7963229 cacttttaaaatcgattcaatcacattttcagtcgggtcaaccgatcttaa 7963179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 356
Target Start/End: Original strand, 896104 - 896221
Alignment:
Q  239 aatcactttttaagtcggttcaaccgatcttaaaagtgtcagcgagagttagctctaatcgaaaaatgtcgaacggaagttaactctaactgagttaaaa 338  Q
    |||||||||||||  ||||||||  |||||||||||| | |||| |||||| |||    ||||||||||||| ||  ||||||||   | |||||||| |    
T  896104 aatcactttttaaaccggttcaattgatcttaaaagtcttagcgtgagttaactcacgccgaaaaatgtcgagcgagagttaacttccattgagttaaga 896203  T
Q  339 gaatgagtaattttaaaa 356  Q
    |||| |||||| ||||||    
T  896204 gaataagtaatcttaaaa 896221  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 35631549 - 35631480
Alignment:
Q  220 gcacttttaaattcgatttaatcactttttaagtcggttcaaccgatcttaaaagtgtcagcgagagtta 289  Q
    ||||||||||  ||| ||||||| | ||||||||| | | |||||||||||||||| |||||| ||||||    
T  35631549 gcacttttaagatcggtttaatccccttttaagtcagctgaaccgatcttaaaagtatcagcgggagtta 35631480  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 23311802 - 23311846
Alignment:
Q  245 tttttaagtcggttcaaccgatcttaaaagtgtcagcgagagtta 289  Q
    |||||||||| |||||||| ||||||||||||||| || ||||||    
T  23311802 tttttaagtcagttcaaccaatcttaaaagtgtcaacgtgagtta 23311846  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 277
Target Start/End: Original strand, 36289619 - 36289675
Alignment:
Q  221 cacttttaaattcgatttaatcactttttaagtcggttcaaccgatcttaaaagtgt 277  Q
    |||||||||  ||||||||||||||||||||||| ||| ||   |||||||||||||    
T  36289619 cacttttaagatcgatttaatcactttttaagtcagtttaatgaatcttaaaagtgt 36289675  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 282
Target Start/End: Original strand, 2604029 - 2604089
Alignment:
Q  222 acttttaaattcgatttaatcactttttaagtcggttcaaccgatcttaaaagtgtcagcg 282  Q
    ||||||||| |||||| ||||| ||||||| |||||||||| |||||||||||| ||||||    
T  2604029 acttttaaaatcgattcaatcattttttaaatcggttcaactgatcttaaaagtttcagcg 2604089  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 40423361 - 40423319
Alignment:
Q  239 aatcactttttaagtcggttcaaccgatcttaaaagtgtcagc 281  Q
    ||||||||||||||||||||||||  |||||||||||||||||    
T  40423361 aatcactttttaagtcggttcaacaaatcttaaaagtgtcagc 40423319  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 276
Target Start/End: Complemental strand, 25844323 - 25844268
Alignment:
Q  221 cacttttaaattcgatttaatcactttttaagtcggttcaaccgatcttaaaagtg 276  Q
    |||||||||  | |||| |||| ||||||||| |||||||||||||||||||||||    
T  25844323 cacttttaagattgattcaatcgctttttaagccggttcaaccgatcttaaaagtg 25844268  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 282
Target Start/End: Complemental strand, 11548199 - 11548161
Alignment:
Q  244 ctttttaagtcggttcaaccgatcttaaaagtgtcagcg 282  Q
    |||||||||||||||| |||||| |||||||||||||||    
T  11548199 ctttttaagtcggttcgaccgatgttaaaagtgtcagcg 11548161  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 40163540 - 40163478
Alignment:
Q  299 gaaaaatgtcgaacggaagttaactctaactgagttaaaagaatgagtaattttaaaaaggag 361  Q
    |||||||||||| ||| |||||||| |||| |||||||| ||||||  |||||||||| ||||    
T  40163540 gaaaaatgtcgagcgggagttaactttaaccgagttaaaggaatgatcaattttaaaagggag 40163478  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 79562 - 79525
Alignment:
Q  239 aatcactttttaagtcggttcaaccgatcttaaaagtg 276  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  79562 aatcactttttaagtcgggtcaactgatcttaaaagtg 79525  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 273
Target Start/End: Original strand, 5961769 - 5961850
Alignment:
Q  192 atttttcaattagagttaactctcattagcacttttaaattcgatttaatcactttttaagtcggttcaaccgatcttaaaa 273  Q
    |||||| | ||||||||||||   ||| ||||||||||  ||  || ||||||||||||||| || ||||||||||||||||    
T  5961769 attttttagttagagttaacttctattggcacttttaagatcagttcaatcactttttaagttggctcaaccgatcttaaaa 5961850  T

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Target: scaffold0526 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 278
Target Start/End: Original strand, 5810 - 5852
Alignment:
Q  236 tttaatcactttttaagtcggttcaaccgatcttaaaagtgtc 278  Q
    ||||||||||||||||||| |||| ||| ||||||||||||||    
T  5810 tttaatcactttttaagtcagttcgaccaatcttaaaagtgtc 5852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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