View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6569_low_4 (Length: 494)
Name: NF6569_low_4
Description: NF6569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6569_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 397; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 12 - 486
Target Start/End: Complemental strand, 33382173 - 33381699
Alignment:
| Q |
12 |
atcatcctattaaaggaatgatgttagattgaaacttgaaaatacttccccatctcgagtccatgatattagattgaataagatccatacccagctgcag |
111 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33382173 |
atcatactattaaaggaatgatgttagattgaaacttgaaaatacttccccatctcgagtccatgatattagattgaataagatccatacccagctgcag |
33382074 |
T |
|
| Q |
112 |
attttgttgaataacaaaggaataatgtgtatcagttaggagcggccaatcttaacgtaacgattgcttcttgtaaactatacaaatttaatgcacttat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33382073 |
attttgttgaataacaaaggaataatgtgtatcagttaggagcggccaatcttaacgtaacgattgcttcttgtaaactatataaatttaatgcacttat |
33381974 |
T |
|
| Q |
212 |
gaaattattnnnnnnnnnnnnnnnnnnnnnncattggcctgaatctttgtcactcaacatatgtacaataatattcaaaacagtttgagcattattattg |
311 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33381973 |
gaaattattaaaatcaaaatcaaaatcaaaacattggcctgaatctttgtcactcaacatatgtacaataatattcaaaacagtttgagcattattattg |
33381874 |
T |
|
| Q |
312 |
ttttcctccaacaatttatggtgttgatttcttctttcaaaatcaatagttttatttttcttgcaagttgaaaacttccgtgttggctgatctcataagt |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33381873 |
ttttcctccaacaatttatggtgttgatttcttctttcaaaatcaatagttttatttttcttgcaagttgaaaacttccgttttggctgatctcataagt |
33381774 |
T |
|
| Q |
412 |
aatctccttaatcacaaagggagagagatgctttaaaatataaaggatagtcattcatattgtatgttgatgatg |
486 |
Q |
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| T |
33381773 |
aatctccttaatcacaaagggagagagatgctttaaaatataaaggatagtcattcatattgtatgttgatgatg |
33381699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 243 - 405
Target Start/End: Original strand, 24630323 - 24630485
Alignment:
| Q |
243 |
cattggcctgaatctttgtcactcaacatatgtacaataatattcaaaacagtttgagcattattattgttttcctccaacaatttatggtgttgatttc |
342 |
Q |
| |
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||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24630323 |
cattggcctaactctttgtcactcaacatatgtacaataatattcaaaactgtttgagcattattattgttttcctccaacaatttatggtgttgatttc |
24630422 |
T |
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| Q |
343 |
ttctttcaaaatcaatagttttatttttcttgcaagttgaaaacttccgtgttggctgatctc |
405 |
Q |
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| T |
24630423 |
ttcttacaaaatcaatacttttatttttcttgcaggttgaagacttccatgtttgctgatctc |
24630485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 74 - 202
Target Start/End: Complemental strand, 33266910 - 33266779
Alignment:
| Q |
74 |
atgatattagattgaataagatccatacccagctgcagattttgttgaataacaaaggaat---aatgtgtatcagttaggagcggccaatcttaacgta |
170 |
Q |
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||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
33266910 |
atgatattagattgaataagatccatatccagctgcagtttttgttgaataacaaaggaataagaatgtgtatcagttaggagcggccaaccttaacgta |
33266811 |
T |
|
| Q |
171 |
acgattgcttcttgtaaactatacaaatttaa |
202 |
Q |
| |
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| |||||||||||||| |||||| ||| |||| |
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| T |
33266810 |
atgattgcttcttgtagactatataaaattaa |
33266779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 423 - 486
Target Start/End: Complemental strand, 33061858 - 33061795
Alignment:
| Q |
423 |
tcacaaagggagagagatgctttaaaatataaaggatagtcattcatattgtatgttgatgatg |
486 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
33061858 |
tcacaaaaggagagggatgctttaaaatataaaggatagccattcgtattgtatgttgatgatg |
33061795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 33276638 - 33276579
Alignment:
| Q |
40 |
ttgaaacttgaaaatacttccccatctcgagtccatgatattagattgaataagatccat |
99 |
Q |
| |
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||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||| |
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|
| T |
33276638 |
ttgaaactttaaaatacttccccatctcaagtccatgatacaagattgaataagatccat |
33276579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 419 - 486
Target Start/End: Complemental strand, 33404443 - 33404376
Alignment:
| Q |
419 |
ttaatcacaaagggagagagatgctttaaaatataaaggatagtcattcatattgtatgttgatgatg |
486 |
Q |
| |
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||||||||||| ||||||| ||||||||||||||||||||||| ||||| | ||||||| |||||||| |
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| T |
33404443 |
ttaatcacaaatggagagatatgctttaaaatataaaggatagccattcttgttgtatgctgatgatg |
33404376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 33276575 - 33276517
Alignment:
| Q |
121 |
aataacaaaggaataa---tgtgtatcagttaggagcggccaatcttaacgtaacgatt |
176 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
33276575 |
aataacaaaggaataagaatgtgtatcagttaggagcggccaaccttaacgtaacgatt |
33276517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 47 - 217
Target Start/End: Original strand, 12580893 - 12581063
Alignment:
| Q |
47 |
ttgaaaatacttccccatctcgagtccatgatattagattgaataagatccatacccagctgcagattttgttgaataacaaagg-aataatgtgtatca |
145 |
Q |
| |
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|||||||||| || ||||||| |||||||||||||||||||||||| |||||| |||||||||| ||| ||||||||||||| |||| | ||||| | |
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| T |
12580893 |
ttgaaaatacctctccatctcaagtccatgatattagattgaataaaatccatgtccagctgcagttttagttgaataacaaaattaatagt-tgtatta |
12580991 |
T |
|
| Q |
146 |
gttaggagcggccaatcttaacgtaacgattgcttcttgtaaactatacaaatttaatgcacttatgaaatt |
217 |
Q |
| |
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||||| ||| ||||| |||| ||||||||||||| |||| ||||||||||||| || ||||||||||| |
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| T |
12580992 |
gttagtagcagccaacattaaaataacgattgcttcaaataaaatatacaaatttaaagcgcttatgaaatt |
12581063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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