View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6569_low_5 (Length: 484)
Name: NF6569_low_5
Description: NF6569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6569_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 18 - 473
Target Start/End: Complemental strand, 32825224 - 32824769
Alignment:
| Q |
18 |
acctttactaaggatgataaattgacaagaatatatttgtacctggagaacacatagtggtatatcacctatcttaaggaaatcttttgcattgtgaaca |
117 |
Q |
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| T |
32825224 |
acctttactaaggatgataaattgacaagaatatatttgtacctggacaacacatagtggtagatcacctatcttaagaaaatcttttgcattgtgaaca |
32825125 |
T |
|
| Q |
118 |
aattgtgcaaaagcttgattaggataagccaagtctccaatttgatccaatttgcattcacttgaagccacaacaaagccaataccttctgcattgcaat |
217 |
Q |
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| T |
32825124 |
aattgtgcaaaagcttgattaggataagccaagtctccaatttgattcaatttgtattcacttgaagccacaacaaagccaacaccttctgcattgcaat |
32825025 |
T |
|
| Q |
218 |
ctatctccaacctgttggtttcagtgttcatctttaatcttccagcaaggaagtcataagctactagagcatcttctaaagctttctttaacttctcggt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32825024 |
ctatctccaacctgttggtttcagtgttcatctttaatcttccagcaaggaagtcataagctactagagcatcttctaaagctttctttaacttctcggt |
32824925 |
T |
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| Q |
318 |
cactatttgaggaggaaaatctttgtttgcttcgaagaaatgaaccgtttttacgtagaaattgagtaccttgtctatatttgataagaacatggatttg |
417 |
Q |
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| T |
32824924 |
cactatttgaggaggaaaatctttgtttgcttcgaagaaatgaaccgtttttacgtagaaattgagtaccttgtctatatttgataagaacatggatttg |
32824825 |
T |
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| Q |
418 |
ttctcggtttgttttgatggaaaaatcattgaagttttgtggattgtcaccttcat |
473 |
Q |
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| T |
32824824 |
ttctcggtttgttttgatggaaaaatcattgaagttttgtggattgtcaccttcat |
32824769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 18 - 473
Target Start/End: Complemental strand, 32808529 - 32808074
Alignment:
| Q |
18 |
acctttactaaggatgataaattgacaagaatatatttgtacctggagaacacatagtggtatatcacctatcttaaggaaatcttttgcattgtgaaca |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
32808529 |
acctttactaaggatgataaattgacaagaatatatttgtacctggacaacacatagtggtagatcacctatcttaagaaaatcttttgcattgtgaaca |
32808430 |
T |
|
| Q |
118 |
aattgtgcaaaagcttgattaggataagccaagtctccaatttgatccaatttgcattcacttgaagccacaacaaagccaataccttctgcattgcaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32808429 |
aattgtgcaaaagcttgattaggataagccaagtctccaatttgattcaatttgtattcacttgaagccacaacaaagccaacaccttctgcattgcaat |
32808330 |
T |
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| Q |
218 |
ctatctccaacctgttggtttcagtgttcatctttaatcttccagcaaggaagtcataagctactagagcatcttctaaagctttctttaacttctcggt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32808329 |
ctatctccaacctgttggtttcagtgttcatctttaatcttccagcaaggaagtcataagctactagagcatcttctaaagctttctttaacttctcggt |
32808230 |
T |
|
| Q |
318 |
cactatttgaggaggaaaatctttgtttgcttcgaagaaatgaaccgtttttacgtagaaattgagtaccttgtctatatttgataagaacatggatttg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||| || ||||||| ||||||||||||| |||||| |
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| T |
32808229 |
cactatttgaggaggaaaatctttgtttgcttcgaagaaatgaaccgttttcacatgaaaattgagaactctgtctatgtttgataagaacaaggatttc |
32808130 |
T |
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| Q |
418 |
ttctcggtttgttttgatggaaaaatcattgaagttttgtggattgtcaccttcat |
473 |
Q |
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|| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32808129 |
ttttcgatttgttttgatgggaaaatcattgaagttttgtggattgtcaccttcat |
32808074 |
T |
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