View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6569_low_6 (Length: 473)
Name: NF6569_low_6
Description: NF6569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6569_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 4e-76; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 81 - 260
Target Start/End: Complemental strand, 16943673 - 16943493
Alignment:
| Q |
81 |
tgaaagaaaaatataatcattgtgttatttatattatttttcaatatatataagaaatagtcaaatgcaactcaaaagcacttggatt-aaataataaag |
179 |
Q |
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| T |
16943673 |
tgaaagaaaaatataatcattgtgttatttatattatttttcaatatatataagaaatagtcaaatgcaactcaaaagtacttggattaaaataataaag |
16943574 |
T |
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| Q |
180 |
gttcttttcggtctaagcaaagattatgagaatgtagtagtgttaaatatcttaaatgagaattttgctatccataaagat |
260 |
Q |
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| T |
16943573 |
gttcttttcaatctaagcaaagattatgagaacgtagtagtgttaaatatattaaatgagagttttactatccataaagat |
16943493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 392 - 457
Target Start/End: Complemental strand, 16942077 - 16942012
Alignment:
| Q |
392 |
tgaacacacaattttcattttgtttgatttcaatgccaagaaagtaggtcataagaccaagatctg |
457 |
Q |
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| T |
16942077 |
tgaacacacaattttcattttgtttgatttcaatgccaagaaagtaggtcataagaccaagatctg |
16942012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 343 - 386
Target Start/End: Complemental strand, 16943402 - 16943359
Alignment:
| Q |
343 |
tcaaatgctaaatttattttgagcggaggaaatatcatctcatt |
386 |
Q |
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| T |
16943402 |
tcaaatgctacatttattttgagcggaggaaatatcatctcatt |
16943359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 402 - 457
Target Start/End: Complemental strand, 43444635 - 43444580
Alignment:
| Q |
402 |
attttcattttgtttgatttcaatgccaagaaagtaggtcataagaccaagatctg |
457 |
Q |
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| T |
43444635 |
attttcattttgcttgatttcaataccaagaaagtaagtcataagaccaagatctg |
43444580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 457
Target Start/End: Complemental strand, 18014263 - 18014216
Alignment:
| Q |
410 |
tttgtttgatttcaatgccaagaaagtaggtcataagaccaagatctg |
457 |
Q |
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| T |
18014263 |
tttgtttgatctcaattccaagaaaatatgtcataagaccaagatctg |
18014216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 402 - 457
Target Start/End: Complemental strand, 8989062 - 8989007
Alignment:
| Q |
402 |
attttcattttgtttgatttcaatgccaagaaagtaggtcataagaccaagatctg |
457 |
Q |
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| T |
8989062 |
attttcattttgcttgatttcaataccaagaaagtaagtcataagaccaagatctg |
8989007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 402 - 457
Target Start/End: Complemental strand, 43585947 - 43585892
Alignment:
| Q |
402 |
attttcattttgtttgatttcaatgccaagaaagtaggtcataagaccaagatctg |
457 |
Q |
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| T |
43585947 |
attttcattttgcttgatttcaataccaagaaagtaagtcataagaccaagatctg |
43585892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 402 - 455
Target Start/End: Original strand, 35966832 - 35966885
Alignment:
| Q |
402 |
attttcattttgtttgatttcaatgccaagaaagtaggtcataagaccaagatc |
455 |
Q |
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| T |
35966832 |
attttcattttgcttgatttcaacaccaagaaagtaagtcataagaccaagatc |
35966885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 402 - 455
Target Start/End: Original strand, 35988244 - 35988297
Alignment:
| Q |
402 |
attttcattttgtttgatttcaatgccaagaaagtaggtcataagaccaagatc |
455 |
Q |
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| T |
35988244 |
attttcattttgcttgatttcaacaccaagaaagtaagtcataagaccaagatc |
35988297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 402 - 457
Target Start/End: Complemental strand, 26257085 - 26257030
Alignment:
| Q |
402 |
attttcattttgtttgatttcaatgccaagaaagtaggtcataagaccaagatctg |
457 |
Q |
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| T |
26257085 |
attttcattttgcttgatttcaataccaagaaagtaagtcataagaccaagatctg |
26257030 |
T |
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