View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6569_low_8 (Length: 412)
Name: NF6569_low_8
Description: NF6569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6569_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 136; Significance: 8e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 183 - 402
Target Start/End: Complemental strand, 8184226 - 8184005
Alignment:
| Q |
183 |
aggattgtgtaacttgtatacaatatattaggaaatgttaataaaatatttttagataatctgtattgttgttttaaacgttttaagaagttattcctct |
282 |
Q |
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| T |
8184226 |
aggattgtgtaacttgtatacaatatattaggaaatgttaataaaatatttttagataatctgtattgttgttttaaacgttttaagaagttattcctct |
8184127 |
T |
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| Q |
283 |
tctaagnnnnnnngttattcctattcctctcaaaaaataattaagaag-nnnnnnnngagt-nnnnnnngaagttattcctattgcagatgcatggcaaa |
380 |
Q |
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| T |
8184126 |
tctaagaaaaaaagttattcctattcctctcaaaaaataattaagaagtttttttttgagtaaaaaaaagaagttattcctattgcagatgtatggcaaa |
8184027 |
T |
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| Q |
381 |
ttgaagcaagtttattcctttg |
402 |
Q |
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| T |
8184026 |
ttgaagcaagtttattcctttg |
8184005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 8184355 - 8184214
Alignment:
| Q |
18 |
attatggcatatctcaagttttattgagtatttaatttggccatggccacggccacaaaatgctttatgtgaggattcttatcaggggaaagatacttca |
117 |
Q |
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| T |
8184355 |
attatggcatatctcaaattttattgagtatttaatttggcca------cggccacaatatgctttatgtgaggattcttatcaggggaaatatacttca |
8184262 |
T |
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| Q |
118 |
ttaaaatnnnnnnngtgatgcttcatatatcttttaggattgtgtaac |
165 |
Q |
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| T |
8184261 |
ttaaaataaaaaaagtgatgcttcatatatcttttaggattgtgtaac |
8184214 |
T |
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