View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6571_high_14 (Length: 302)
Name: NF6571_high_14
Description: NF6571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6571_high_14 |
 | |
|
| [»] scaffold0016 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 17 - 288
Target Start/End: Complemental strand, 27511938 - 27511667
Alignment:
| Q |
17 |
cactcactctcctctattaccgtcccgtctgccggtcacatctcaaagtctctccttctccccatcgtcttttctctccttcgctccatcaccctttcct |
116 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27511938 |
cactcactctcctctcttaccgtcccgtctgccggtcacatctcaaagtctctccttctccccatcgtcttttctctccttcgctccatcgccctttcct |
27511839 |
T |
|
| Q |
117 |
ctcttactgtctcctccgccaatctcatctcaaagtctttccttcgccccatcgccccctcttctctcacagtctcctcccccggtctcatctcaaagtc |
216 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27511838 |
ctcttactgtcttctccgccaatctcatctcaaagtctttccttcgccccatcgccccctcttctctcacagtctcctcccccggtctcatctcaaagtc |
27511739 |
T |
|
| Q |
217 |
ttacctttaccccatcgtcttgtctgtccttcgcccctcttaccgctattttaaagccaatccccatctcat |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27511738 |
ttacctttaccccatcgtcttgtctgtccttcgcccctcttaccgctattttaaagccaatccccatctcat |
27511667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 27512210 - 27512158
Alignment:
| Q |
48 |
ccggtcacatctcaaagtctctccttctccccatcgtcttttctctccttcgc |
100 |
Q |
| |
|
|||||| | ||||||||||||||| || ||||||||| | ||||||||||||| |
|
|
| T |
27512210 |
ccggtctcctctcaaagtctctccatcgccccatcgtttgttctctccttcgc |
27512158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 126 - 219
Target Start/End: Original strand, 77329 - 77422
Alignment:
| Q |
126 |
tctcctccgccaatctcatctcaaagtctttccttcgccccatcgccccctcttctctcacagtctcctcccccggtctcatctcaaagtctta |
219 |
Q |
| |
|
|||| ||||||| |||||| ||||||| |||||||| |||||| ||| ||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
77329 |
tctcttccgccagtctcatatcaaagtatttccttcaccccattgccatctcttctataacagtctcctcccccggtctcatctcaaagtctta |
77422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 77283 - 77323
Alignment:
| Q |
65 |
tctctccttctccccatcgtcttttctctccttcgctccat |
105 |
Q |
| |
|
|||||||||||||||||| | ||||||||| |||||||||| |
|
|
| T |
77283 |
tctctccttctccccatccttttttctctctttcgctccat |
77323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University