View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6571_high_20 (Length: 239)
Name: NF6571_high_20
Description: NF6571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6571_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 25868658 - 25868867
Alignment:
| Q |
13 |
agagaccagatattgacaagtttgtttaatggtgacaaaattaacatagaagatacatccaaaattcattaatttttcagaaatctgtgtttacaaacag |
112 |
Q |
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| T |
25868658 |
agagaccagatattgacaagtttgtttaatggtgacaaaattaacatagaagatacatccaaaattcattaatttttcagaaatctgtgtttacaaacag |
25868757 |
T |
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| Q |
113 |
gagaatctcctctctgatggaatgagacttctcacaaggaaaggtgagtaaagttatgtggttggaaatatcaaatgaaaactcagttatatcaacttca |
212 |
Q |
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| T |
25868758 |
gagaatctcctctctgatggaatgagacttctcacaaagaaaggtgagtaaagttatgtggttggaaatatcaaatgaaaattcagttatatcaacttca |
25868857 |
T |
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| Q |
213 |
acctcagtaa |
222 |
Q |
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| T |
25868858 |
acctcagtaa |
25868867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 16 - 218
Target Start/End: Original strand, 25866670 - 25866878
Alignment:
| Q |
16 |
gaccagatattgacaagtttgtttaatggtgacaaaattaacatagaagatacatccaaaattcattaatttttcagaaatctgtgtttacaa----aca |
111 |
Q |
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| T |
25866670 |
gaccagatattgacaagtttgtttaacagtgacaaatttaacatgtaagatacatccaaaatggattaaatttcaagcaatccatctttacaaacagaca |
25866769 |
T |
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| Q |
112 |
ggagaatctcctctctgatggaatgagacttctcacaaggaaaggtgagtaaagttatgtggtt--ggaaatatcaaatgaaaactcagttatatcaact |
209 |
Q |
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| T |
25866770 |
ggagaatctcctctccgatggaatgagacttctcacacagaaaggtgagtaaagtttggttgttgggggagtatcaaatgagaacttagttatagcaact |
25866869 |
T |
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| Q |
210 |
tcaacctca |
218 |
Q |
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|||| |||| |
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| T |
25866870 |
tcaaactca |
25866878 |
T |
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