View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6571_high_3 (Length: 474)
Name: NF6571_high_3
Description: NF6571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6571_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 11 - 458
Target Start/End: Original strand, 41878402 - 41878850
Alignment:
| Q |
11 |
gaagaagacccaaatagtgtgtagaaaatgaatgaacatgttaattaatatgatcaatcttattacttacacgtgacagtgcatagctgtgtcacgtagc |
110 |
Q |
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| T |
41878402 |
gaagaagacccaaatagtgtgtagaaaatgaatgaacatgttaattaatatgatcaatcttattacttacacgtgacagtgcatagctgtgtcacgtagc |
41878501 |
T |
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| Q |
111 |
atagaattttctagcaaatacaagaattctcaacctatattacttccagcacattctaactttgtattgtataaacctcctataaataaaaaccacctta |
210 |
Q |
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| T |
41878502 |
atagaattttctagcaaatacaagaattctcaacctatattacttccagcacattctaactttgtattgtataaacctcctataaataaaaaccaccttg |
41878601 |
T |
|
| Q |
211 |
cactttgtattttatgacatacatcataaacataaat-aactttctttgtagcaagcaacaatgaagccaatcgacgagaaacaagagacggtaacaata |
309 |
Q |
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| T |
41878602 |
cactttgtattgtataacatacatcataaacataaataaactttctttgtagcaagcagcaatgaagccaatcgacgagaaacaagagacggtaacaata |
41878701 |
T |
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| Q |
310 |
agagcagtgagtcacgacgaagaaggaaaaaagagagttgaaaaaacagaactcaacacacacaacatagacacaatcaaacatgtggagaagaaactca |
409 |
Q |
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| T |
41878702 |
agagcagtgagtcacgacgaagaaggaaaaaagagagttgaaaaaacagaactaaacacacacaacatagacacaatcaaacatgtggagaagaaactca |
41878801 |
T |
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| Q |
410 |
tcaacaacggtgtccaacgtctggaccgccaccctgtcgacggcatagg |
458 |
Q |
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| T |
41878802 |
tcaacaacggtgtccaacgtctggaccgccaccctgtcgacggcatagg |
41878850 |
T |
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