View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6571_high_8 (Length: 390)
Name: NF6571_high_8
Description: NF6571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6571_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 20 - 333
Target Start/End: Original strand, 26416101 - 26416414
Alignment:
| Q |
20 |
tcacagttcaggtatataatatatctccctccctttttataaccacattttcgcactatagtttttaattagagctcagattaatatatttcattttgac |
119 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| |||| |||||||||||||||||||| |
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| T |
26416101 |
tcactgttcaggtatataatatatctcactccctttttataagcacattttcgcactctaatttttaattagagttcaggttaatatatttcattttgac |
26416200 |
T |
|
| Q |
120 |
ttgttcaaaataaattagagccgaggtagcaattatgttcttatgaagtaatttaattaatacatattcaatttttctcatgcagtcaggacaaatacaa |
219 |
Q |
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|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26416201 |
ttattcaaaataaattagaaccgaggtagcaattatgttcttatgaagtaatttaattaatacatattcaatttttctcatgcagtcaggacaaatacaa |
26416300 |
T |
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| Q |
220 |
ttgtgtaacacaaagatgaatatgaaaacacaagaatcaaaaagagagtaccctttacctgaaaaatcatctcttggtcatttaagcttagaccttgagc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26416301 |
ttgtgtaacacaaagatgaatatgaaaacacaagaatcaaaaagagagtaccctttacctgaaaaatcatctcttggtcatttaagcttagaccttgagc |
26416400 |
T |
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| Q |
320 |
ttaatttgacatgt |
333 |
Q |
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|||||||||||||| |
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| T |
26416401 |
ttaatttgacatgt |
26416414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 138
Target Start/End: Complemental strand, 14432801 - 14432763
Alignment:
| Q |
100 |
ttaatatatttcattttgacttgttcaaaataaattaga |
138 |
Q |
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| T |
14432801 |
ttaatatatttcattttaacttgttcaaaaaaaattaga |
14432763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 4347084 - 4347051
Alignment:
| Q |
100 |
ttaatatatttcattttgacttgttcaaaataaa |
133 |
Q |
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||||||||||||||||||||||||| |||||||| |
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| T |
4347084 |
ttaatatatttcattttgacttgttgaaaataaa |
4347051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 8462601 - 8462630
Alignment:
| Q |
100 |
ttaatatatttcattttgacttgttcaaaa |
129 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
8462601 |
ttaatatatttcattttgacttgttcaaaa |
8462630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 50818606 - 50818635
Alignment:
| Q |
100 |
ttaatatatttcattttgacttgttcaaaa |
129 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
50818606 |
ttaatatatttcattttgacttgttcaaaa |
50818635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 132
Target Start/End: Original strand, 25435379 - 25435411
Alignment:
| Q |
100 |
ttaatatatttcattttgacttgttcaaaataa |
132 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
25435379 |
ttaatataattcattttgacttgttcaaaataa |
25435411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 13496994 - 13497030
Alignment:
| Q |
100 |
ttaatatatttcattttgacttgttcaaaataaatta |
136 |
Q |
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||||||||||||||||||||||||| |||| |||||| |
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| T |
13496994 |
ttaatatatttcattttgacttgttaaaaaaaaatta |
13497030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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